Protein : Qrob_P0020350.2 Q. robur
Protein Identifier  ? Qrob_P0020350.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=13) PF11955 - Plant organelle RNA recognition domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 400  
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0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103927164 3 398 + 396 Gaps:22 98.29 409 74.13 0.0 protein ROOT PRIMORDIUM DEFECTIVE 1-like
blastp_kegg lcl|fve:101292767 3 398 + 396 Gaps:3 96.11 411 74.94 0.0 uncharacterized protein LOC101292767
blastp_kegg lcl|pxb:103927173 3 398 + 396 Gaps:22 98.29 409 73.38 0.0 uncharacterized LOC103927173
blastp_kegg lcl|vvi:100257435 1 394 + 394 Gaps:14 97.28 405 76.65 0.0 uncharacterized LOC100257435
blastp_kegg lcl|pxb:103961908 3 393 + 391 Gaps:6 97.52 403 76.84 0.0 protein ROOT PRIMORDIUM DEFECTIVE 1-like
blastp_kegg lcl|mdm:103417531 3 393 + 391 Gaps:6 97.52 403 77.10 0.0 protein ROOT PRIMORDIUM DEFECTIVE 1-like
blastp_kegg lcl|csv:101212691 1 394 + 394 Gaps:7 100.00 389 76.86 0.0 uncharacterized LOC101212691
blastp_kegg lcl|pper:PRUPE_ppa006492mg 3 394 + 392 Gaps:10 97.31 409 74.12 0.0 hypothetical protein
blastp_kegg lcl|mdm:103446636 30 392 + 363 Gaps:2 82.05 440 79.50 0.0 protein ROOT PRIMORDIUM DEFECTIVE 1
blastp_kegg lcl|pvu:PHAVU_009G031800g 1 395 + 395 Gaps:8 97.98 397 74.04 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q689D6|RPD1_ARATH 15 395 + 381 Gaps:64 92.18 409 30.50 7e-26 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS Arabidopsis thaliana GN RPD1 PE 1 SV 1
rpsblast_cdd gnl|CDD|192895 70 394 + 325 Gaps:10 97.89 332 43.69 1e-101 pfam11955 PORR Plant organelle RNA recognition domain. This family which was previously known as DUF860 has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 43 399 357 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 2 394 393 PTHR31476:SF14 none none none
PANTHER 2 394 393 PTHR31476 none none none
Pfam 70 394 325 PF11955 none Plant organelle RNA recognition domain IPR021099
Phobius 24 42 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 23 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 5   Mitochondrion 3 0.031 0.795 NON-PLANT 5