Protein : Qrob_P0018380.2 Q. robur
Protein Identifier  ? Qrob_P0018380.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PTHR23067 - DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 453  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

10 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10019520mg 1 428 + 428 Gaps:25 77.00 526 55.56 1e-119 hypothetical protein
blastp_kegg lcl|cit:102607541 24 428 + 405 Gaps:17 68.42 570 55.64 2e-117 MAP7 domain-containing protein 1-like
blastp_kegg lcl|rcu:RCOM_1060520 56 411 + 356 Gaps:22 46.07 725 58.68 3e-113 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa018307mg 23 452 + 430 Gaps:97 93.78 370 49.86 3e-77 hypothetical protein
blastp_kegg lcl|pmum:103337155 2 372 + 371 Gaps:79 72.97 444 49.38 7e-69 mediator of RNA polymerase II transcription subunit 15-like
blastp_kegg lcl|tcc:TCM_005599 46 387 + 342 Gaps:33 42.82 731 48.24 5e-67 hypothetical protein
blastp_kegg lcl|fve:101306183 21 356 + 336 Gaps:21 46.12 683 50.16 5e-63 uncharacterized protein LOC101306183
blastp_kegg lcl|pper:PRUPE_ppa018574mg 8 353 + 346 Gaps:33 46.37 675 50.80 8e-58 hypothetical protein
blastp_kegg lcl|pmum:103331705 8 353 + 346 Gaps:20 47.52 686 50.92 3e-54 uncharacterized LOC103331705
blastp_kegg lcl|tcc:TCM_015968 239 427 + 189 Gaps:23 97.67 172 55.95 2e-45 hypothetical protein

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 139 173 35 SM00451 none U1-like zinc finger IPR003604
SMART 300 334 35 SM00451 none U1-like zinc finger IPR003604
SUPERFAMILY 119 173 55 SSF57667 none none none
Pfam 143 166 24 PF12874 none Zinc-finger of C2H2 type none
Pfam 304 327 24 PF12874 none Zinc-finger of C2H2 type none
SUPERFAMILY 292 334 43 SSF57667 none none none
PANTHER 143 182 40 PTHR23067 none none none
PANTHER 257 332 76 PTHR23067 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting