Protein : Qrob_P0018360.2 Q. robur
Protein Identifier  ? Qrob_P0018360.2 Organism . Name  Quercus robur
Score  85.0 Score Type  egn
Protein Description  (M=1) PTHR22594:SF6 - ASPARTYL-TRNA SYNTHETASE Code Enzyme  EC:6.1.1.22
Gene Prediction Quality  validated Protein length 

Sequence

Length: 161  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004816 asparagine-tRNA ligase activity Catalysis of the reaction: L-asparagine + ATP + tRNA(Asn) = AMP + Asn-tRNA(Asn) + diphosphate + 2 H(+).
GO:0006421 asparaginyl-tRNA aminoacylation The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g100920 100 145 + 46 none 8.14 565 82.61 5e-18 Asparaginyl-tRNA synthetase
blastp_kegg lcl|cam:101508705 103 145 + 43 none 7.80 551 86.05 1e-17 asparagine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|gmx:100801732 104 145 + 42 none 7.62 551 90.48 4e-17 asparagine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|gmx:100796860 104 145 + 42 none 7.64 550 90.48 5e-17 asparagine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|pvu:PHAVU_003G220700g 104 145 + 42 none 7.68 547 88.10 1e-16 hypothetical protein
blastp_kegg lcl|csv:101220532 103 145 + 43 none 7.65 562 83.72 4e-16 asparagine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|cmo:103490884 103 145 + 43 none 7.65 562 83.72 4e-16 asparagine--tRNA ligase chloroplastic/mitochondrial
blastp_kegg lcl|fve:101311319 103 145 + 43 none 7.66 561 86.05 7e-16 asparagine--tRNA ligase chloroplastic/mitochondrial-like
blastp_kegg lcl|pxb:103940220 103 145 + 43 none 7.49 574 86.05 7e-16 asparagine--tRNA ligase chloroplastic/mitochondrial
blastp_kegg lcl|mdm:103437082 103 145 + 43 none 7.89 545 86.05 7e-16 asparagine--tRNA ligase chloroplastic/mitochondrial
blastp_pdb 1x56_A 105 145 + 41 none 9.45 434 56.10 9e-06 mol:protein length:434 Asparaginyl-tRNA synthetase
blastp_pdb 1x55_A 105 145 + 41 none 9.45 434 56.10 9e-06 mol:protein length:434 Asparaginyl-tRNA synthetase
blastp_pdb 1x54_A 105 145 + 41 none 9.45 434 56.10 9e-06 mol:protein length:434 Asparaginyl-tRNA synthetase
blastp_uniprot_sprot sp|O48593|SYNO_ARATH 103 145 + 43 none 7.58 567 81.40 2e-16 Asparagine--tRNA ligase chloroplastic/mitochondrial OS Arabidopsis thaliana GN SYNO PE 2 SV 3
blastp_uniprot_sprot sp|A3DBI2|SYN_CLOTH 104 153 + 50 Gaps:2 10.34 464 70.83 8e-14 Asparagine--tRNA ligase OS Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|A3QE68|SYN_SHELP 104 145 + 42 none 9.01 466 66.67 2e-12 Asparagine--tRNA ligase OS Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|A7GB01|SYN_CLOBL 104 144 + 41 none 8.86 463 68.29 2e-12 Asparagine--tRNA ligase OS Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|A5HZE1|SYN_CLOBH 104 144 + 41 none 8.86 463 68.29 2e-12 Asparagine--tRNA ligase OS Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|A7FRK8|SYN_CLOB1 104 144 + 41 none 8.86 463 68.29 2e-12 Asparagine--tRNA ligase OS Clostridium botulinum (strain ATCC 19397 / Type A) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|Q97E56|SYN_CLOAB 104 144 + 41 none 8.86 463 68.29 3e-12 Asparagine--tRNA ligase OS Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|Q0HIB6|SYN_SHESM 104 145 + 42 none 9.01 466 64.29 4e-12 Asparagine--tRNA ligase OS Shewanella sp. (strain MR-4) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|Q8EEZ1|SYN_SHEON 104 145 + 42 none 9.01 466 64.29 4e-12 Asparagine--tRNA ligase OS Shewanella oneidensis (strain MR-1) GN asnS PE 3 SV 1
blastp_uniprot_sprot sp|Q0HUL3|SYN_SHESR 104 145 + 42 none 9.01 466 64.29 4e-12 Asparagine--tRNA ligase OS Shewanella sp. (strain MR-7) GN asnS PE 3 SV 1
rpsblast_cdd gnl|CDD|179678 104 145 + 42 none 9.33 450 71.43 1e-19 PRK03932 asnC asparaginyl-tRNA synthetase Validated.
rpsblast_cdd gnl|CDD|178213 77 145 + 69 none 12.39 565 80.00 2e-19 PLN02603 PLN02603 asparaginyl-tRNA synthetase.
rpsblast_cdd gnl|CDD|200017 103 145 + 43 none 9.49 453 55.81 3e-14 TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS) archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch) and bacterial type aspartyl-tRNA synthetases (aspS_bact) there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence and a striking divergence of aspS_bact. Consequently a separate model was built for each of the three groups. This model asnS represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp followed by transamidation of Asp to Asn.
rpsblast_cdd gnl|CDD|30367 103 145 + 43 none 9.89 435 51.16 9e-12 COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|29821 104 145 + 42 none 13.04 322 50.00 4e-11 cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS they possess a non-discriminating aspRS which can mischarge Asp-tRNA with Asn. Subsequently a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate..
rpsblast_cdd gnl|CDD|177867 103 145 + 43 none 7.52 572 58.14 7e-11 PLN02221 PLN02221 asparaginyl-tRNA synthetase.
rpsblast_cdd gnl|CDD|185610 103 145 + 43 none 7.34 586 51.16 8e-10 PTZ00425 PTZ00425 asparagine-tRNA ligase Provisional.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 103 145 43 PTHR22594:SF6 "KEGG:00970+6.1.1.22","Reactome:REACT_71";signature_desc=ASPARTYL-TRNA SYNTHETASE none IPR004522
PANTHER 103 145 43 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
SUPERFAMILY 96 145 50 SSF55681 none none none
Gene3D 103 144 42 G3DSA:3.30.930.10 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting