Protein : Qrob_P0018350.2 Q. robur
Protein Identifier  ? Qrob_P0018350.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR13402 - RGPR-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1471  
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Sequence Feature Displayer

Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0048208 COPII vesicle coating The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103337159 1 1470 + 1470 Gaps:118 100.00 1418 70.31 0.0 uncharacterized LOC103337159
blastp_kegg lcl|pper:PRUPE_ppa000272mg 1 1470 + 1470 Gaps:146 100.00 1366 71.96 0.0 hypothetical protein
blastp_kegg lcl|pxb:103940221 1 1470 + 1470 Gaps:133 100.00 1417 69.02 0.0 uncharacterized LOC103940221
blastp_kegg lcl|mdm:103410545 1 1470 + 1470 Gaps:144 100.00 1424 67.63 0.0 uncharacterized LOC103410545
blastp_kegg lcl|tcc:TCM_015961 1 1470 + 1470 Gaps:148 100.00 1396 69.27 0.0 RGPR-related putative isoform 1
blastp_kegg lcl|pop:POPTR_0001s15800g 1 1470 + 1470 Gaps:148 100.00 1388 67.36 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10018486mg 1 1470 + 1470 Gaps:132 100.00 1462 64.30 0.0 hypothetical protein
blastp_kegg lcl|cmo:103490883 1 1470 + 1470 Gaps:115 100.00 1421 64.95 0.0 uncharacterized LOC103490883
blastp_kegg lcl|cit:102631242 1 1470 + 1470 Gaps:124 100.00 1464 64.41 0.0 protein transport protein Sec16B-like
blastp_kegg lcl|gmx:100811102 1 1470 + 1470 Gaps:145 100.00 1423 63.74 0.0 COPII coat assembly protein SEC16-like
blastp_uniprot_sprot sp|Q75N33|SC16B_RAT 596 1009 + 414 Gaps:68 35.57 1057 32.71 4e-32 Protein transport protein Sec16B OS Rattus norvegicus GN Sec16b PE 2 SV 1
blastp_uniprot_sprot sp|Q91XT4|SC16B_MOUSE 596 1009 + 414 Gaps:58 35.78 1051 30.85 1e-31 Protein transport protein Sec16B OS Mus musculus GN Sec16b PE 1 SV 3
blastp_uniprot_sprot sp|Q96JE7|SC16B_HUMAN 596 1009 + 414 Gaps:60 35.47 1060 32.98 3e-31 Protein transport protein Sec16B OS Homo sapiens GN SEC16B PE 1 SV 2
blastp_uniprot_sprot sp|Q6BCB4|SC16B_RABIT 596 1009 + 414 Gaps:88 35.98 1045 35.90 4e-31 Protein transport protein Sec16B OS Oryctolagus cuniculus GN SEC16B PE 2 SV 1
blastp_uniprot_sprot sp|Q75NY9|SC16B_BOVIN 435 1013 + 579 Gaps:95 53.42 1052 29.18 6e-30 Protein transport protein Sec16B OS Bos taurus GN SEC16B PE 2 SV 1
blastp_uniprot_sprot sp|Q6AW68|SC16B_CHICK 596 1013 + 418 Gaps:62 40.69 929 32.01 7e-30 Protein transport protein Sec16B OS Gallus gallus GN SEC16B PE 2 SV 1
blastp_uniprot_sprot sp|O15027|SC16A_HUMAN 596 1015 + 420 Gaps:70 17.81 2179 30.67 1e-29 Protein transport protein Sec16A OS Homo sapiens GN SEC16A PE 1 SV 3
blastp_uniprot_sprot sp|Q4WD95|SEC16_ASPFU 599 1062 + 464 Gaps:78 25.76 1832 28.18 2e-24 COPII coat assembly protein sec16 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN sec16 PE 3 SV 1
blastp_uniprot_sprot sp|A1DLN3|SEC16_NEOFI 599 1117 + 519 Gaps:84 28.61 1835 27.81 3e-24 COPII coat assembly protein sec16 OS Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN sec16 PE 3 SV 1
blastp_uniprot_sprot sp|Q0CGY7|SEC16_ASPTN 599 1062 + 464 Gaps:96 26.14 1806 27.33 5e-22 COPII coat assembly protein sec16 OS Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN sec16 PE 3 SV 1
rpsblast_cdd gnl|CDD|187750 667 1039 + 373 Gaps:67 100.00 314 39.17 2e-88 cd09233 ACE1-Sec16-like Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16. COPII coat complex plays an important role in vesicular traffic of newly synthezised proteins from the endoplasmatic reticulum (ER) to the Golgi apparatus by mediating the formation of transport vesicles. COPII consists of an outer coat made up of the scaffold proteins Sec31 and Sec13 and the cargo adaptor complex Sec23 and Sec24 which are recruited by the small GTPase Sar1. Sec16 is involved in the early steps of the assembly process. Sec16 forms elongated heterotetramers with Sec13 Sec13-(Sec16)2-Sec13. It interacts with Sec13 by insertion of a single beta-blade to close the six-bladded beta propeller of Sec13. In the same way Sec13 interacts with Sec31 and Nup145C a nuclear pore protein all of these contain a structurally related ancestral coatomer element 1 (ACE1). Sec16 is believed to be a key component in maintaining the integrity of the ER exit site.
rpsblast_cdd gnl|CDD|205153 781 1015 + 235 Gaps:34 80.66 274 28.51 2e-23 pfam12931 Sec16_C Sec23-binding domain of Sec16. Sec16 is a multi-domain vesicle coat protein. The C-terminal region is the part that binds to Sec23 a COPII vesicle coat protein. This association is part of the transport vesicle coat structure.
rpsblast_cdd gnl|CDD|205154 596 716 + 121 Gaps:17 100.00 104 32.69 4e-22 pfam12932 Sec16 Vesicle coat trafficking protein Sec16 mid-region. Sec16 is a multi-domain vesicle coat protein. This central region is the functional part of the molecules and thus is vital for the family's role in mediating the movement of protein-cargo between the organelles of the secretory pathway.
rpsblast_kog gnl|CDD|37124 156 1449 + 1294 Gaps:219 88.76 1423 29.45 1e-126 KOG1913 KOG1913 KOG1913 Regucalcin gene promoter region-related protein (RGPR) [Transcription].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 596 721 126 PF12932 none Vesicle coat trafficking protein Sec16 mid-region IPR024340
PANTHER 1428 1448 21 PTHR13402 none none IPR024880
PANTHER 336 1331 996 PTHR13402 none none IPR024880
Pfam 782 1045 264 PF12931 none Sec23-binding domain of Sec16 IPR024298

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting