Protein : Qrob_P0018300.2 Q. robur
Protein Identifier  ? Qrob_P0018300.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR17490:SF1 - gb def: putative transmembrane protein ta-2 [xenopus laevis] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 267  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s03050g 1 265 + 265 Gaps:12 96.83 284 74.18 6e-143 POPTRDRAFT_768259 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa009466mg 23 266 + 244 none 83.85 291 78.69 2e-136 hypothetical protein
blastp_kegg lcl|mdm:103413027 13 266 + 254 Gaps:1 85.76 295 77.08 5e-135 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|tcc:TCM_042043 10 265 + 256 Gaps:1 77.98 327 76.08 2e-134 DHBP synthase RibB-like alpha/beta domain isoform 1
blastp_kegg lcl|cic:CICLE_v10029204mg 35 265 + 231 none 99.57 232 81.82 4e-134 hypothetical protein
blastp_kegg lcl|pmum:103325225 23 266 + 244 none 83.85 291 77.05 8e-134 yrdC domain-containing protein mitochondrial
blastp_kegg lcl|pxb:103927845 13 266 + 254 Gaps:1 85.76 295 76.68 2e-133 yrdC domain-containing protein mitochondrial
blastp_kegg lcl|cit:102630893 33 265 + 233 none 85.35 273 81.55 8e-133 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|vvi:100251962 10 265 + 256 Gaps:8 91.18 272 77.82 2e-132 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|rcu:RCOM_0154480 35 264 + 230 Gaps:1 99.14 233 79.65 3e-131 Protein SUA5 putative
blastp_pdb 1jcu_A 62 246 + 185 Gaps:6 86.06 208 35.20 2e-24 mol:protein length:208 conserved protein MTH1692
blastp_pdb 4e1b_A 74 244 + 171 Gaps:10 48.01 352 31.36 3e-13 mol:protein length:352 YrdC/Sua5 family protein
blastp_pdb 3aje_A 74 244 + 171 Gaps:10 48.01 352 31.36 3e-13 mol:protein length:352 Putative uncharacterized protein ST1526
blastp_pdb 2eqa_A 74 244 + 171 Gaps:10 48.01 352 31.36 3e-13 mol:protein length:352 Hypothetical protein ST1526
blastp_pdb 1hru_B 64 196 + 133 Gaps:7 71.28 188 33.58 4e-12 mol:protein length:188 YRDC GENE PRODUCT
blastp_pdb 1hru_A 64 196 + 133 Gaps:7 71.28 188 33.58 4e-12 mol:protein length:188 YRDC GENE PRODUCT
blastp_pdb 1kk9_A 35 233 + 199 Gaps:11 90.50 221 25.50 1e-11 mol:protein length:221 probable translation factor yciO
blastp_pdb 1k7j_A 63 233 + 171 Gaps:9 82.52 206 27.65 6e-11 mol:protein length:206 Protein yciO
blastp_uniprot_sprot sp|Q499R4|YRDC_RAT 62 260 + 199 Gaps:9 72.14 280 46.04 1e-51 YrdC domain-containing protein mitochondrial OS Rattus norvegicus GN Yrdc PE 2 SV 1
blastp_uniprot_sprot sp|Q0VC80|YRDC_BOVIN 62 260 + 199 Gaps:8 72.83 276 48.26 2e-50 YrdC domain-containing protein mitochondrial OS Bos taurus GN YRDC PE 2 SV 1
blastp_uniprot_sprot sp|Q86U90|YRDC_HUMAN 62 257 + 196 Gaps:8 70.97 279 46.46 1e-48 YrdC domain-containing protein mitochondrial OS Homo sapiens GN YRDC PE 1 SV 1
blastp_uniprot_sprot sp|Q3U5F4|YRDC_MOUSE 62 257 + 196 Gaps:8 70.71 280 46.46 2e-48 YrdC domain-containing protein mitochondrial OS Mus musculus GN Yrdc PE 1 SV 1
blastp_uniprot_sprot sp|Q60369|TSAC_METJA 44 218 + 175 Gaps:16 83.57 207 34.68 2e-25 Putative threonylcarbamoyl-AMP synthase OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ0062 PE 3 SV 1
blastp_uniprot_sprot sp|Q10618|TSAC_MYCTU 64 252 + 189 Gaps:13 85.71 217 34.95 2e-17 Putative threonylcarbamoyl-AMP synthase OS Mycobacterium tuberculosis GN Rv1301 PE 3 SV 1
blastp_uniprot_sprot sp|P39153|SUA5_BACSU 63 251 + 189 Gaps:9 54.34 346 30.85 8e-16 Threonylcarbamoyl-AMP synthase OS Bacillus subtilis (strain 168) GN ywlC PE 1 SV 1
blastp_uniprot_sprot sp|Q9UYB2|SUA5_PYRAB 72 251 + 180 Gaps:10 52.35 340 31.46 4e-15 Threonylcarbamoyl-AMP synthase OS Pyrococcus abyssi (strain GE5 / Orsay) GN sua5 PE 1 SV 1
blastp_uniprot_sprot sp|A1JRY6|TSAC_YERE8 63 195 + 133 Gaps:7 70.53 190 33.58 3e-14 Threonylcarbamoyl-AMP synthase OS Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) GN tsaC PE 3 SV 1
blastp_uniprot_sprot sp|P45831|TSAC_MYCLE 63 252 + 190 Gaps:13 85.00 220 33.69 5e-14 Putative threonylcarbamoyl-AMP synthase OS Mycobacterium leprae (strain TN) GN ML1136 PE 3 SV 1
rpsblast_cdd gnl|CDD|201719 66 244 + 179 Gaps:9 100.00 178 41.57 3e-41 pfam01300 Sua5_yciO_yrdC Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.
rpsblast_cdd gnl|CDD|30359 62 252 + 191 Gaps:10 89.57 211 38.10 4e-37 COG0009 SUA5 Putative translation factor (SUA5) [Translation ribosomal structure and biogenesis].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 34 262 229 PTHR17490 none none none
TIGRFAM 60 252 193 TIGR00057 none TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family IPR006070
ProSiteProfiles 58 246 189 PS51163 none YrdC-like domain profile. IPR006070
SUPERFAMILY 59 251 193 SSF55821 none none IPR017945
Pfam 66 244 179 PF01300 none Telomere recombination IPR006070
Gene3D 59 252 194 G3DSA:3.90.870.10 none none IPR017945
PANTHER 34 262 229 PTHR17490:SF1 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Mitochondrion 5 0.059 0.533 NON-PLANT 26