Protein : Qrob_P0018290.2 Q. robur
Protein Identifier  ? Qrob_P0018290.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PTHR23012:SF25 - PREDICTED PROTEIN (FRAGMENT) Code Enzyme  EC:6.3.2.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 514  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103325214 1 471 + 471 Gaps:6 98.13 482 75.48 0.0 uncharacterized LOC103325214
blastp_kegg lcl|pper:PRUPE_ppa005009mg 1 471 + 471 Gaps:6 98.13 482 75.69 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0154490 1 490 + 490 Gaps:9 98.79 495 73.82 0.0 protein binding protein putative
blastp_kegg lcl|mdm:103447955 11 475 + 465 Gaps:7 87.48 535 72.86 0.0 uncharacterized LOC103447955
blastp_kegg lcl|mdm:103422843 1 478 + 478 Gaps:13 99.79 476 72.63 0.0 uncharacterized LOC103422843
blastp_kegg lcl|pxb:103956779 1 473 + 473 Gaps:11 99.58 474 71.61 0.0 uncharacterized LOC103956779
blastp_kegg lcl|cic:CICLE_v10028219mg 1 512 + 512 Gaps:30 99.81 515 70.43 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G078700g 5 509 + 505 Gaps:18 98.64 516 69.16 0.0 hypothetical protein
blastp_kegg lcl|cit:102606695 1 512 + 512 Gaps:30 99.81 515 70.23 0.0 uncharacterized LOC102606695
blastp_kegg lcl|tcc:TCM_042042 1 495 + 495 Gaps:12 98.23 508 71.54 0.0 RING/U-box superfamily protein isoform 1
rpsblast_cdd gnl|CDD|128983 266 315 + 50 Gaps:1 100.00 49 48.98 2e-15 smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain similar to the RING PHD and LIM domains is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C.
rpsblast_cdd gnl|CDD|193379 267 314 + 48 Gaps:1 100.00 47 44.68 1e-13 pfam12906 RINGv RING-variant domain.
rpsblast_cdd gnl|CDD|34782 262 326 + 65 Gaps:12 6.38 1175 29.33 2e-07 COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification].
rpsblast_kog gnl|CDD|36822 235 457 + 223 Gaps:10 72.14 323 25.75 1e-26 KOG1609 KOG1609 KOG1609 Protein involved in mRNA turnover and stability [RNA processing and modification].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 29 480 452 PTHR23012 none none none
Phobius 396 406 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 429 433 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 407 428 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 262 318 57 G3DSA:3.30.40.10 none none IPR013083
PANTHER 29 480 452 PTHR23012:SF25 none none none
Phobius 434 456 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 351 351 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 259 321 63 PS51292 "UniPathway:UPA00143" Zinc finger RING-CH-type profile. IPR011016
Phobius 457 513 57 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 378 395 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 267 314 48 PF12906 "UniPathway:UPA00143" RING-variant domain IPR011016
SUPERFAMILY 263 318 56 SSF57850 none none none
Phobius 373 377 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 266 315 50 SM00744 "UniPathway:UPA00143" The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. IPR011016
Phobius 352 372 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
TMHMM 406 428 22
TMHMM 433 455 22
TMHMM 371 393 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting