Protein : Qrob_P0018200.2 Q. robur
Protein Identifier  ? Qrob_P0018200.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 3.2.1.145 - Galactan 1,3-beta-galactosidase. Code Enzyme  EC:3.2.1.145
Gene Prediction Quality  validated Protein length 

Sequence

Length: 854  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0030246 carbohydrate binding Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100245036 1 844 + 844 Gaps:10 100.00 846 80.97 0.0 beta-galactosidase 8-like
blastp_kegg lcl|rcu:RCOM_0155170 9 844 + 836 Gaps:9 99.41 842 82.68 0.0 beta-galactosidase putative (EC:3.2.1.23)
blastp_kegg lcl|tcc:TCM_041048 1 844 + 844 Gaps:11 100.00 845 79.88 0.0 Beta-galactosidase 8 isoform 1
blastp_kegg lcl|cic:CICLE_v10027805mg 7 844 + 838 Gaps:9 99.41 848 81.14 0.0 hypothetical protein
blastp_kegg lcl|cit:102609139 7 844 + 838 Gaps:9 99.41 848 81.14 0.0 beta-galactosidase 8-like
blastp_kegg lcl|gmx:100793198 1 843 + 843 Gaps:14 99.88 838 79.69 0.0 beta-galactosidase 8-like
blastp_kegg lcl|pop:POPTR_0009s01780g 15 843 + 829 Gaps:26 97.80 864 78.93 0.0 POPTRDRAFT_1088755 beta-galactosidase family protein
blastp_kegg lcl|pmum:103325132 20 843 + 824 Gaps:10 97.64 848 79.47 0.0 beta-galactosidase 8
blastp_kegg lcl|pxb:103930633 20 843 + 824 Gaps:8 98.34 842 78.62 0.0 beta-galactosidase 8-like
blastp_kegg lcl|mdm:103422143 20 843 + 824 Gaps:8 98.34 842 78.14 0.0 beta-galactosidase 8-like
blastp_pdb 3d3a_A 35 334 + 300 Gaps:31 50.82 612 36.01 2e-43 mol:protein length:612 Beta-galactosidase
blastp_pdb 3thd_D 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thd_C 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thd_B 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thd_A 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_D 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_C 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_B 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_A 22 350 + 329 Gaps:30 52.45 654 31.78 2e-33 mol:protein length:654 Beta-galactosidase
blastp_pdb 1xc6_A 28 364 + 337 Gaps:60 39.65 971 29.61 1e-23 mol:protein length:971 Beta-Galactosidase
blastp_uniprot_sprot sp|Q9SCV4|BGAL8_ARATH 26 844 + 819 Gaps:14 96.60 852 75.58 0.0 Beta-galactosidase 8 OS Arabidopsis thaliana GN BGAL8 PE 2 SV 2
blastp_uniprot_sprot sp|Q10NX8|BGAL6_ORYSJ 23 844 + 822 Gaps:21 96.85 858 71.00 0.0 Beta-galactosidase 6 OS Oryza sativa subsp. japonica GN Os03g0255100 PE 1 SV 2
blastp_uniprot_sprot sp|P45582|BGAL_ASPOF 20 843 + 824 Gaps:33 97.72 832 59.78 0.0 Beta-galactosidase OS Asparagus officinalis PE 2 SV 1
blastp_uniprot_sprot sp|P48980|BGAL_SOLLC 26 844 + 819 Gaps:35 97.49 835 59.34 0.0 Beta-galactosidase OS Solanum lycopersicum PE 1 SV 1
blastp_uniprot_sprot sp|Q5N8X6|BGAL3_ORYSJ 26 844 + 819 Gaps:23 95.89 851 56.74 0.0 Beta-galactosidase 3 OS Oryza sativa subsp. japonica GN Os01g0875500 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SCV9|BGAL3_ARATH 1 843 + 843 Gaps:33 98.36 856 55.82 0.0 Beta-galactosidase 3 OS Arabidopsis thaliana GN BGAL3 PE 1 SV 1
blastp_uniprot_sprot sp|Q10RB4|BGAL5_ORYSJ 24 844 + 821 Gaps:30 96.91 841 57.91 0.0 Beta-galactosidase 5 OS Oryza sativa subsp. japonica GN Os03g0165400 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SCW1|BGAL1_ARATH 16 843 + 828 Gaps:25 97.40 847 57.45 0.0 Beta-galactosidase 1 OS Arabidopsis thaliana GN BGAL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SCV3|BGAL9_ARATH 27 844 + 818 Gaps:41 94.81 887 55.05 0.0 Beta-galactosidase 9 OS Arabidopsis thaliana GN BGAL9 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W0A1|BGAL2_ORYSJ 29 843 + 815 Gaps:29 96.74 827 57.63 0.0 Beta-galactosidase 2 OS Oryza sativa subsp. japonica GN Os01g0580200 PE 2 SV 1

29 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 38 55 18 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 305 321 17 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 647 663 17 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 167 182 16 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 110 129 20 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 248 263 16 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 285 300 16 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 620 634 15 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
SUPERFAMILY 695 753 59 SSF49785 none none IPR008979
SUPERFAMILY 588 666 79 SSF49785 none none IPR008979
Phobius 18 25 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 26 853 828 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 690 758 69 PTHR23421 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807";signature_desc=BETA-GALACTOSIDASE RELATED none IPR001944
PANTHER 9 663 655 PTHR23421 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807";signature_desc=BETA-GALACTOSIDASE RELATED none IPR001944
SUPERFAMILY 399 575 177 SSF49785 none none IPR008979
Gene3D 27 342 316 G3DSA:3.20.20.80 none none IPR013781
SUPERFAMILY 28 342 315 SSF51445 none none IPR017853
Pfam 35 337 303 PF01301 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolases family 35 IPR001944
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSiteProfiles 758 844 87 PS50228 none SUEL-type lectin domain profile. IPR000922
PANTHER 690 758 69 PTHR23421:SF54 none none none
PANTHER 9 663 655 PTHR23421:SF54 none none none
ProSitePatterns 169 181 13 PS01182 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolases family 35 putative active site. IPR019801
Pfam 766 843 78 PF02140 none Galactose binding lectin domain IPR000922
Gene3D 428 573 146 G3DSA:2.60.120.260 none none IPR008979
Gene3D 614 725 112 G3DSA:2.60.120.260 none none IPR008979
Pfam 467 574 108 PF02837 none Glycosyl hydrolases family 2, sugar binding domain IPR006104
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none

2 Localization

Analysis Start End Length
TMHMM 7 29 22
SignalP_EUK 1 25 24

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.937 0.033 NON-PLANT 25