Protein : Qrob_P0017290.2 Q. robur
Protein Identifier  ? Qrob_P0017290.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR12526//PTHR12526:SF300 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 993  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103331224 1 979 + 979 Gaps:74 99.90 1044 68.94 0.0 uncharacterized LOC103331224
blastp_kegg lcl|mdm:103408193 1 979 + 979 Gaps:79 99.90 1041 68.37 0.0 uncharacterized LOC103408193
blastp_kegg lcl|tcc:TCM_043407 1 979 + 979 Gaps:92 100.00 1041 66.57 0.0 UDP-Glycosyltransferase superfamily protein isoform 1
blastp_kegg lcl|pxb:103951749 1 979 + 979 Gaps:75 99.90 1047 66.16 0.0 uncharacterized LOC103951749
blastp_kegg lcl|cam:101505326 4 980 + 977 Gaps:81 99.42 1042 66.22 0.0 uncharacterized LOC101505326
blastp_kegg lcl|pvu:PHAVU_007G141200g 4 979 + 976 Gaps:82 99.33 1049 64.40 0.0 hypothetical protein
blastp_kegg lcl|gmx:100790929 5 979 + 975 Gaps:110 99.23 1045 65.28 0.0 uncharacterized LOC100790929
blastp_kegg lcl|gmx:100779157 27 979 + 953 Gaps:99 97.32 1044 65.85 0.0 uncharacterized LOC100779157
blastp_kegg lcl|pop:POPTR_0008s02940g 6 978 + 973 Gaps:90 98.68 1061 63.80 0.0 hypothetical protein
blastp_kegg lcl|cit:102618162 25 979 + 955 Gaps:88 96.78 1055 65.13 0.0 uncharacterized LOC102618162
rpsblast_cdd gnl|CDD|201287 364 497 + 134 Gaps:8 82.28 158 30.00 1e-08 pfam00534 Glycos_transf_1 Glycosyl transferases group 1. Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates including glycogen Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP ADP GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.
rpsblast_cdd gnl|CDD|30787 364 531 + 168 Gaps:9 42.78 381 25.15 1e-07 COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis outer membrane].
rpsblast_cdd gnl|CDD|99987 249 505 + 257 Gaps:40 64.44 374 26.97 1e-07 cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG also known as 1 2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1 2-diacylglycerol forming 3-D-glucosyl-1 2-diacylglycerol..
rpsblast_cdd gnl|CDD|99974 241 511 + 271 Gaps:50 66.58 374 25.70 2e-07 cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules forming glycosidic bonds. The acceptor molecule can be a lipid a protein a heterocyclic compound or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP ADP GDP or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea..
rpsblast_cdd gnl|CDD|99980 372 512 + 141 Gaps:8 37.05 359 30.83 3e-07 cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides..

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 145 549 405 PTHR12526:SF300 none none none
Coils 948 969 22 Coil none none none
Phobius 1 69 69 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 619 640 22 Coil none none none
Pfam 382 497 116 PF00534 none Glycosyl transferases group 1 IPR001296
PANTHER 145 549 405 PTHR12526 none none none
Phobius 70 90 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 91 992 902 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 236 496 261 SSF53756 none none none

1 Localization

Analysis Start End Length
TMHMM 70 92 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting