Protein : Qrob_P0017220.2 Q. robur
Protein Identifier  ? Qrob_P0017220.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=2) KOG4172//KOG4265 - Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. // Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. Code Enzyme  EC:6.3.2.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 901  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001269mg 1 900 + 900 Gaps:35 100.00 867 84.08 0.0 hypothetical protein
blastp_kegg lcl|pxb:103940483 1 900 + 900 Gaps:35 100.00 867 82.93 0.0 uncharacterized LOC103940483
blastp_kegg lcl|pop:POPTR_0008s03010g 1 900 + 900 Gaps:43 100.00 861 82.81 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331218 1 900 + 900 Gaps:46 100.00 856 83.76 0.0 uncharacterized LOC103331218
blastp_kegg lcl|fve:101291374 1 900 + 900 Gaps:36 100.00 866 80.25 0.0 uncharacterized protein LOC101291374
blastp_kegg lcl|mdm:103408212 1 900 + 900 Gaps:35 100.00 867 82.12 0.0 uncharacterized LOC103408212
blastp_kegg lcl|mdm:103438868 1 900 + 900 Gaps:35 100.00 867 82.24 0.0 trichohyalin
blastp_kegg lcl|pxb:103951705 1 900 + 900 Gaps:35 100.00 867 81.89 0.0 uncharacterized LOC103951705
blastp_kegg lcl|tcc:TCM_043382 1 900 + 900 Gaps:40 100.00 866 83.14 0.0 RING/U-box superfamily protein
blastp_kegg lcl|cic:CICLE_v10030689mg 1 900 + 900 Gaps:44 100.00 862 83.29 0.0 hypothetical protein
blastp_uniprot_sprot sp|P29503|NEUR_DROME 848 898 + 51 Gaps:2 7.03 754 58.49 1e-11 Protein neuralized OS Drosophila melanogaster GN neur PE 1 SV 2
blastp_uniprot_sprot sp|Q24746|NEUR_DROVI 848 898 + 51 Gaps:2 7.10 747 58.49 2e-11 Protein neuralized OS Drosophila virilis GN neur PE 4 SV 1
blastp_uniprot_sprot sp|Q0MW30|NEU1B_MOUSE 844 897 + 54 Gaps:1 10.07 546 49.09 7e-09 E3 ubiquitin-protein ligase NEURL1B OS Mus musculus GN Neurl1b PE 1 SV 1
blastp_uniprot_sprot sp|A8MQ27|NEU1B_HUMAN 843 897 + 55 Gaps:1 10.09 555 44.64 1e-08 E3 ubiquitin-protein ligase NEURL1B OS Homo sapiens GN NEURL1B PE 1 SV 1
blastp_uniprot_sprot sp|Q7XI08|XB34_ORYSJ 831 899 + 69 none 13.45 513 34.78 3e-08 Probable E3 ubiquitin-protein ligase XBOS34 OS Oryza sativa subsp. japonica GN XBOS34 PE 2 SV 1
blastp_uniprot_sprot sp|O76050|NEUL1_HUMAN 848 897 + 50 Gaps:1 8.89 574 39.22 2e-06 E3 ubiquitin-protein ligase NEURL1 OS Homo sapiens GN NEURL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q923S6|NEUL1_MOUSE 848 897 + 50 Gaps:1 8.89 574 39.22 3e-06 E3 ubiquitin-protein ligase NEURL1 OS Mus musculus GN Neurl1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8WZ73|RFFL_HUMAN 826 897 + 72 Gaps:9 20.11 363 35.62 6e-06 E3 ubiquitin-protein ligase rififylin OS Homo sapiens GN RFFL PE 1 SV 1
rpsblast_cdd gnl|CDD|206091 844 893 + 50 Gaps:1 100.00 49 38.78 2e-13 pfam13920 zf-C3HC4_3 Zinc finger C3HC4 type (RING finger).
rpsblast_cdd gnl|CDD|206094 845 888 + 44 Gaps:2 97.78 45 34.09 2e-08 pfam13923 zf-C3HC4_2 Zinc finger C3HC4 type (RING finger).
rpsblast_kog gnl|CDD|39374 848 898 + 51 Gaps:1 83.87 62 48.08 2e-14 KOG4172 KOG4172 KOG4172 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|39466 832 898 + 67 Gaps:1 19.48 349 33.82 6e-09 KOG4265 KOG4265 KOG4265 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 845 892 48 PF13920 none Zinc finger, C3HC4 type (RING finger) none
SUPERFAMILY 847 893 47 SSF57850 none none none
ProSiteProfiles 848 887 40 PS50089 none Zinc finger RING-type profile. IPR001841
PANTHER 761 898 138 PTHR10044 none none none
Gene3D 843 892 50 G3DSA:3.30.40.10 none none IPR013083

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting