Protein : Qrob_P0017050.2 Q. robur
Protein Identifier  ? Qrob_P0017050.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=10) 3.1.27.1 - Ribonuclease T(2). Code Enzyme  EC:3.1.27.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 181  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0033897 ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103402895 1 119 + 119 Gaps:84 89.82 226 33.00 1e-21 extracellular ribonuclease LE-like
blastp_kegg lcl|pxb:103950818 1 119 + 119 Gaps:84 89.82 226 33.50 1e-21 extracellular ribonuclease LE-like
blastp_kegg lcl|tcc:TCM_011699 1 119 + 119 Gaps:86 89.91 228 35.12 9e-21 Ribonuclease 3
blastp_kegg lcl|rcu:RCOM_0836490 1 119 + 119 Gaps:84 89.82 226 33.50 5e-20 ribonuclease t2 putative (EC:3.1.27.1)
blastp_kegg lcl|pmum:103321574 7 120 + 114 Gaps:84 87.22 227 35.35 1e-19 ribonuclease 3-like
blastp_kegg lcl|pper:PRUPE_ppa011014mg 7 120 + 114 Gaps:84 87.22 227 34.85 4e-19 hypothetical protein
blastp_kegg lcl|cit:102615052 1 117 + 117 Gaps:84 88.94 226 33.83 6e-19 ribonuclease 3-like
blastp_kegg lcl|cic:CICLE_v10032674mg 1 117 + 117 Gaps:84 88.94 226 33.83 7e-19 hypothetical protein
blastp_kegg lcl|fve:101303991 7 120 + 114 Gaps:86 87.34 229 34.00 2e-18 ribonuclease 3-like
blastp_kegg lcl|pop:POPTR_0008s08640g 34 131 + 98 Gaps:29 53.30 227 45.45 3e-18 POPTRDRAFT_820480 S2-RNase family protein
blastp_pdb 1iyb_B 43 119 + 77 Gaps:26 49.52 208 44.66 2e-17 mol:protein length:208 Ribonuclease
blastp_pdb 1iyb_A 43 119 + 77 Gaps:26 49.52 208 44.66 2e-17 mol:protein length:208 Ribonuclease
blastp_pdb 1dix_A 43 121 + 79 Gaps:27 50.96 208 42.45 1e-15 mol:protein length:208 EXTRACELLULAR RIBONUCLEASE LE
blastp_pdb 1vd3_A 42 116 + 75 Gaps:29 46.08 217 36.00 9e-10 mol:protein length:217 RNase NGR3
blastp_pdb 1vd1_A 42 116 + 75 Gaps:29 46.08 217 36.00 9e-10 mol:protein length:217 RNase NGR3
blastp_pdb 1vcz_A 42 116 + 75 Gaps:29 46.08 217 36.00 9e-10 mol:protein length:217 RNase NGR3
blastp_pdb 1ucg_B 53 83 + 31 none 16.32 190 58.06 2e-07 mol:protein length:190 Ribonuclease MC
blastp_pdb 1ucg_A 53 83 + 31 none 16.32 190 58.06 2e-07 mol:protein length:190 Ribonuclease MC
blastp_pdb 1j1g_A 53 83 + 31 none 16.32 190 58.06 2e-07 mol:protein length:190 Ribonuclease MC1
blastp_pdb 1ucd_A 53 83 + 31 none 16.32 190 58.06 2e-07 mol:protein length:190 Ribonuclease MC
blastp_uniprot_sprot sp|P42813|RNS1_ARATH 42 119 + 78 Gaps:26 45.22 230 43.27 6e-17 Ribonuclease 1 OS Arabidopsis thaliana GN RNS1 PE 1 SV 1
blastp_uniprot_sprot sp|P80022|RNLE_SOLLC 43 121 + 79 Gaps:27 46.09 230 42.45 2e-15 Extracellular ribonuclease LE OS Solanum lycopersicum PE 1 SV 2
blastp_uniprot_sprot sp|P42815|RNS3_ARATH 7 117 + 111 Gaps:84 87.84 222 30.26 3e-14 Ribonuclease 3 OS Arabidopsis thaliana GN RNS3 PE 2 SV 1
blastp_uniprot_sprot sp|P80196|RNLX_SOLLC 42 142 + 101 Gaps:29 53.16 237 35.71 9e-13 Intracellular ribonuclease LX OS Solanum lycopersicum GN RNALX PE 1 SV 2
blastp_uniprot_sprot sp|P23540|RNMC_MOMCH 53 83 + 31 none 16.23 191 58.06 7e-07 Ribonuclease MC OS Momordica charantia PE 1 SV 1
rpsblast_cdd gnl|CDD|201232 51 116 + 66 Gaps:28 51.65 182 35.11 7e-12 pfam00445 Ribonuclease_T2 Ribonuclease T2 family.
rpsblast_cdd gnl|CDD|29473 51 138 + 88 Gaps:26 58.46 195 30.70 4e-10 cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh RNase MC1 RNase LE and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site) for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond respectively. This CD includes the eukaryotic RNase T2 family members..
rpsblast_cdd gnl|CDD|29472 51 138 + 88 Gaps:26 58.46 195 28.95 3e-09 cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh RNase MC1 RNase LE and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen..
rpsblast_kog gnl|CDD|36855 46 148 + 103 Gaps:32 51.33 263 30.37 8e-11 KOG1642 KOG1642 KOG1642 Ribonuclease T2 family [RNA processing and modification].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 48 86 39 PF00445 none Ribonuclease T2 family IPR001568
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 8 127 120 SSF55895 none none IPR001568
Phobius 5 13 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProSitePatterns 53 64 12 PS00531 none Ribonuclease T2 family histidine active site 2. IPR018188
Gene3D 48 85 38 G3DSA:3.90.730.10 none none IPR001568
Phobius 19 180 162 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
ProSiteProfiles 1 21 21 PS51257 none Prokaryotic membrane lipoprotein lipid attachment site profile. none
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

2 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 20 19
SignalP_EUK 1 23 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.959 0.011 NON-PLANT 23