Protein : Qrob_P0017030.2 Q. robur
Protein Identifier  ? Qrob_P0017030.2 Organism . Name  Quercus robur
Score  42.1 Score Type  egn
Protein Description  (M=9) K01166 - ribonuclease T2 [EC:3.1.27.1] Code Enzyme  EC:3.1.27.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 229  
Kegg Orthology  K01166
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0033897 ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_5g040940 1 228 + 228 none 100.00 228 74.56 2e-127 Ribonuclease T2
blastp_kegg lcl|pxb:103950818 1 228 + 228 Gaps:2 100.00 226 74.78 1e-126 extracellular ribonuclease LE-like
blastp_kegg lcl|mdm:103402895 1 228 + 228 Gaps:2 100.00 226 73.89 1e-125 extracellular ribonuclease LE-like
blastp_kegg lcl|cam:101498556 1 228 + 228 Gaps:1 100.00 229 72.93 4e-125 ribonuclease 1-like (EC:3.1.27.1)
blastp_kegg lcl|cam:101498891 1 228 + 228 Gaps:1 100.00 229 72.93 4e-125 ribonuclease 1-like
blastp_kegg lcl|mdm:103451813 1 228 + 228 Gaps:2 100.00 226 73.45 2e-124 extracellular ribonuclease LE
blastp_kegg lcl|fve:101304276 1 228 + 228 Gaps:7 100.00 231 72.73 3e-123 extracellular ribonuclease LE-like
blastp_kegg lcl|mtr:MTR_5g040960 1 228 + 228 Gaps:2 100.00 230 74.78 2e-122 Ribonuclease T2
blastp_kegg lcl|rcu:RCOM_0836480 1 228 + 228 Gaps:2 100.00 226 76.99 4e-122 ribonuclease t2 putative (EC:3.1.27.1)
blastp_kegg lcl|pop:POPTR_0008s08640g 26 228 + 203 none 89.43 227 78.82 3e-121 POPTRDRAFT_820480 S2-RNase family protein
blastp_pdb 1dix_A 22 228 + 207 Gaps:1 100.00 208 73.56 3e-115 mol:protein length:208 EXTRACELLULAR RIBONUCLEASE LE
blastp_pdb 1iyb_B 22 228 + 207 none 99.52 208 72.46 4e-114 mol:protein length:208 Ribonuclease
blastp_pdb 1iyb_A 22 228 + 207 none 99.52 208 72.46 4e-114 mol:protein length:208 Ribonuclease
blastp_pdb 1vd3_A 22 228 + 207 Gaps:4 95.39 217 60.39 2e-95 mol:protein length:217 RNase NGR3
blastp_pdb 1vd1_A 22 228 + 207 Gaps:4 95.39 217 60.39 2e-95 mol:protein length:217 RNase NGR3
blastp_pdb 1vcz_A 22 228 + 207 Gaps:4 95.39 217 60.39 2e-95 mol:protein length:217 RNase NGR3
blastp_pdb 1j1f_A 27 225 + 199 Gaps:10 100.00 191 39.79 5e-39 mol:protein length:191 RIBONUCLEASE MC1
blastp_pdb 1ucd_A 28 225 + 198 Gaps:10 100.00 190 40.53 7e-39 mol:protein length:190 Ribonuclease MC
blastp_pdb 1ucc_A 28 225 + 198 Gaps:10 100.00 190 40.53 7e-39 mol:protein length:190 Ribonuclease MC
blastp_pdb 1uca_A 28 225 + 198 Gaps:10 100.00 190 40.53 7e-39 mol:protein length:190 Ribonuclease MC
blastp_uniprot_sprot sp|P80022|RNLE_SOLLC 7 228 + 222 Gaps:3 96.09 230 71.49 4e-118 Extracellular ribonuclease LE OS Solanum lycopersicum PE 1 SV 2
blastp_uniprot_sprot sp|P42813|RNS1_ARATH 8 228 + 221 none 96.09 230 70.14 8e-117 Ribonuclease 1 OS Arabidopsis thaliana GN RNS1 PE 1 SV 1
blastp_uniprot_sprot sp|P80196|RNLX_SOLLC 1 228 + 228 Gaps:5 95.78 237 63.88 5e-108 Intracellular ribonuclease LX OS Solanum lycopersicum GN RNALX PE 1 SV 2
blastp_uniprot_sprot sp|P42815|RNS3_ARATH 11 228 + 218 none 98.20 222 59.17 6e-102 Ribonuclease 3 OS Arabidopsis thaliana GN RNS3 PE 2 SV 1
blastp_uniprot_sprot sp|Q7M438|RNDI_DICDI 8 227 + 220 Gaps:21 96.41 223 41.40 1e-40 Ribonuclease DdI OS Dictyostelium discoideum GN ddiA PE 1 SV 3
blastp_uniprot_sprot sp|P23540|RNMC_MOMCH 28 225 + 198 Gaps:9 100.00 191 39.79 3e-38 Ribonuclease MC OS Momordica charantia PE 1 SV 1
blastp_uniprot_sprot sp|P42814|RNS2_ARATH 6 188 + 183 Gaps:19 77.22 259 39.50 2e-35 Ribonuclease 2 OS Arabidopsis thaliana GN RNS2 PE 2 SV 1
blastp_uniprot_sprot sp|P83618|RN28_PANGI 30 213 + 184 Gaps:5 75.21 238 34.08 2e-30 Ribonuclease-like storage protein OS Panax ginseng PE 1 SV 2
blastp_uniprot_sprot sp|Q38716|RNS2_ANTHI 11 212 + 202 Gaps:18 85.11 235 36.00 2e-28 Ribonuclease S-2 OS Antirrhinum hispanicum GN S2 PE 2 SV 1
blastp_uniprot_sprot sp|Q7M456|RNOY_CRAGI 26 211 + 186 Gaps:12 88.26 213 35.64 3e-28 Ribonuclease Oy OS Crassostrea gigas PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 7 20 14 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 25 227 203 SSF55895 none none IPR001568
Pfam 28 212 185 PF00445 none Ribonuclease T2 family IPR001568
ProSitePatterns 113 124 12 PS00531 none Ribonuclease T2 family histidine active site 2. IPR018188
ProSitePatterns 60 67 8 PS00530 none Ribonuclease T2 family histidine active site 1. IPR018188
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 26 228 203 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 7 228 222 PTHR11240 none none IPR001568
Gene3D 24 226 203 G3DSA:3.90.730.10 none none IPR001568
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 27 26
SignalP_GRAM_POSITIVE 1 25 24
SignalP_EUK 1 25 24

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.958 0.014 NON-PLANT 25