Protein : Qrob_P0017020.2 Q. robur
Protein Identifier  ? Qrob_P0017020.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) K01166 - ribonuclease T2 [EC:3.1.27.1] Code Enzyme  EC:3.1.27.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 229  
Kegg Orthology  K01166
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0033897 ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_5g040940 1 228 + 228 none 100.00 228 75.44 2e-128 Ribonuclease T2
blastp_kegg lcl|pxb:103950818 1 228 + 228 Gaps:2 100.00 226 74.34 1e-125 extracellular ribonuclease LE-like
blastp_kegg lcl|mdm:103402895 1 228 + 228 Gaps:2 100.00 226 74.34 1e-125 extracellular ribonuclease LE-like
blastp_kegg lcl|cam:101498556 1 228 + 228 Gaps:1 100.00 229 73.36 4e-125 ribonuclease 1-like (EC:3.1.27.1)
blastp_kegg lcl|cam:101498891 1 228 + 228 Gaps:1 100.00 229 73.36 4e-125 ribonuclease 1-like
blastp_kegg lcl|mdm:103451813 1 228 + 228 Gaps:2 100.00 226 73.89 1e-124 extracellular ribonuclease LE
blastp_kegg lcl|mtr:MTR_5g040960 1 228 + 228 Gaps:2 100.00 230 75.65 2e-123 Ribonuclease T2
blastp_kegg lcl|fve:101304276 1 228 + 228 Gaps:7 100.00 231 72.73 5e-123 extracellular ribonuclease LE-like
blastp_kegg lcl|tcc:TCM_011700 1 228 + 228 Gaps:3 100.00 227 74.45 6e-121 Ribonuclease 1
blastp_kegg lcl|pper:PRUPE_ppa011026mg 1 228 + 228 Gaps:2 100.00 226 76.55 7e-121 hypothetical protein
blastp_pdb 1dix_A 22 228 + 207 Gaps:1 100.00 208 73.08 7e-115 mol:protein length:208 EXTRACELLULAR RIBONUCLEASE LE
blastp_pdb 1iyb_B 22 228 + 207 none 99.52 208 73.43 7e-115 mol:protein length:208 Ribonuclease
blastp_pdb 1iyb_A 22 228 + 207 none 99.52 208 73.43 7e-115 mol:protein length:208 Ribonuclease
blastp_pdb 1vd3_A 22 228 + 207 Gaps:4 95.39 217 61.84 2e-96 mol:protein length:217 RNase NGR3
blastp_pdb 1vd1_A 22 228 + 207 Gaps:4 95.39 217 61.84 2e-96 mol:protein length:217 RNase NGR3
blastp_pdb 1vcz_A 22 228 + 207 Gaps:4 95.39 217 61.84 2e-96 mol:protein length:217 RNase NGR3
blastp_pdb 1ucd_A 28 225 + 198 Gaps:10 100.00 190 40.53 4e-38 mol:protein length:190 Ribonuclease MC
blastp_pdb 1ucc_A 28 225 + 198 Gaps:10 100.00 190 40.53 4e-38 mol:protein length:190 Ribonuclease MC
blastp_pdb 1uca_A 28 225 + 198 Gaps:10 100.00 190 40.53 4e-38 mol:protein length:190 Ribonuclease MC
blastp_pdb 1bk7_A 28 225 + 198 Gaps:10 100.00 190 40.53 4e-38 mol:protein length:190 PROTEIN (RIBONUCLEASE MC1)
blastp_uniprot_sprot sp|P80022|RNLE_SOLLC 3 228 + 226 Gaps:4 98.26 230 70.80 2e-118 Extracellular ribonuclease LE OS Solanum lycopersicum PE 1 SV 2
blastp_uniprot_sprot sp|P42813|RNS1_ARATH 8 228 + 221 none 96.09 230 71.04 3e-116 Ribonuclease 1 OS Arabidopsis thaliana GN RNS1 PE 1 SV 1
blastp_uniprot_sprot sp|P80196|RNLX_SOLLC 1 228 + 228 Gaps:5 95.78 237 63.88 1e-106 Intracellular ribonuclease LX OS Solanum lycopersicum GN RNALX PE 1 SV 2
blastp_uniprot_sprot sp|P42815|RNS3_ARATH 11 228 + 218 none 98.20 222 59.17 7e-101 Ribonuclease 3 OS Arabidopsis thaliana GN RNS3 PE 2 SV 1
blastp_uniprot_sprot sp|Q7M438|RNDI_DICDI 8 227 + 220 Gaps:21 96.41 223 42.33 6e-41 Ribonuclease DdI OS Dictyostelium discoideum GN ddiA PE 1 SV 3
blastp_uniprot_sprot sp|P23540|RNMC_MOMCH 28 225 + 198 Gaps:9 100.00 191 39.79 4e-37 Ribonuclease MC OS Momordica charantia PE 1 SV 1
blastp_uniprot_sprot sp|P42814|RNS2_ARATH 6 187 + 182 Gaps:19 76.83 259 39.70 7e-35 Ribonuclease 2 OS Arabidopsis thaliana GN RNS2 PE 2 SV 1
blastp_uniprot_sprot sp|P83618|RN28_PANGI 30 213 + 184 Gaps:5 75.21 238 34.64 1e-30 Ribonuclease-like storage protein OS Panax ginseng PE 1 SV 2
blastp_uniprot_sprot sp|Q38716|RNS2_ANTHI 11 212 + 202 Gaps:18 85.11 235 35.50 2e-28 Ribonuclease S-2 OS Antirrhinum hispanicum GN S2 PE 2 SV 1
blastp_uniprot_sprot sp|O80325|RNS7_PYRPY 7 225 + 219 Gaps:13 97.35 226 30.00 2e-28 Ribonuclease S-7 OS Pyrus pyrifolia PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 26 228 203 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 7 20 14 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 25 227 203 SSF55895 none none IPR001568
Pfam 28 212 185 PF00445 none Ribonuclease T2 family IPR001568
Gene3D 24 226 203 G3DSA:3.90.730.10 none none IPR001568
ProSitePatterns 60 67 8 PS00530 none Ribonuclease T2 family histidine active site 1. IPR018188
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 7 228 222 PTHR11240 none none IPR001568
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
ProSitePatterns 113 124 12 PS00531 none Ribonuclease T2 family histidine active site 2. IPR018188

2 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 27 26
SignalP_EUK 1 25 24

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.961 0.015 NON-PLANT 25