3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005634 | nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| GO:0000775 | chromosome, centromeric region | The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. |
| GO:0045132 | meiotic chromosome segregation | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|tcc:TCM_043332 | 24 | 305 | + | 282 | Gaps:108 | 100.00 | 382 | 44.50 | 3e-72 | Shugoshin C terminus putative isoform 1 |
| blastp_kegg | lcl|cit:102625934 | 1 | 305 | + | 305 | Gaps:91 | 100.00 | 388 | 44.33 | 4e-71 | shugoshin-1-like |
| blastp_kegg | lcl|pper:PRUPE_ppa026492mg | 18 | 304 | + | 287 | Gaps:84 | 97.78 | 361 | 47.31 | 6e-71 | hypothetical protein |
| blastp_kegg | lcl|vvi:100246085 | 1 | 305 | + | 305 | Gaps:122 | 100.00 | 317 | 46.06 | 5e-57 | shugoshin-1-like |
| blastp_kegg | lcl|pop:POPTR_0010s23580g | 1 | 305 | + | 305 | Gaps:135 | 91.40 | 442 | 41.09 | 3e-54 | POPTRDRAFT_770594 hypothetical protein |
| blastp_kegg | lcl|pmum:103332303 | 16 | 304 | + | 289 | Gaps:122 | 97.11 | 450 | 47.83 | 1e-52 | shugoshin-1 |
| blastp_kegg | lcl|cmo:103496463 | 1 | 303 | + | 303 | Gaps:135 | 99.52 | 416 | 36.47 | 4e-51 | shugoshin-1 |
| blastp_kegg | lcl|pxb:103958415 | 1 | 303 | + | 303 | Gaps:125 | 97.50 | 521 | 40.16 | 2e-46 | shugoshin-1-like |
| blastp_kegg | lcl|pxb:103958439 | 1 | 303 | + | 303 | Gaps:125 | 97.50 | 521 | 40.16 | 2e-46 | shugoshin-1-like |
| blastp_kegg | lcl|mdm:103425720 | 1 | 303 | + | 303 | Gaps:135 | 97.46 | 512 | 40.88 | 2e-44 | shugoshin-1 |
| blastp_uniprot_sprot | sp|Q4QSC8|SGO1_MAIZE | 58 | 303 | + | 246 | Gaps:41 | 48.73 | 474 | 30.74 | 2e-08 | Shugoshin-1 OS Zea mays GN SGO1 PE 2 SV 1 |
8 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran2_2014_aSeqBC_A4 | Qrob_Chr08 | 8 | v_15999_278 | v_AP13YL15_395 | 32,52 | 4,22 | 57,22 | lod | 2,7561 | 6,7 |
| Bourran2_2014_nFork*_A4 | Qrob_Chr08 | 8 | PIE175 | s_1CD7GJ_1398 | 31,22 | 5,24 | 57,24 | lod | 2,6724 | 6,8 |
| Bourran2_2015_rEpiBC_3P | Qrob_Chr08 | 8 | s_A9TNV_543 | v_11837_70 | 9,93 | 9,83 | 11,15 | lod | 3.3 | 7.3 |
| Champenoux_2015_nSeqBC_A4 | Qrob_Chr08 | 8 | v_AD7YD13_501 | s_1A7IED_780 | 43,44 | 43,42 | 43,99 | lod | 3.7 | 8.9 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf | Qrob_Chr08 | 8 | v_5216_549 | v_11625_20 | 37.08 | 12,26 | 54,9 | lod | 6.5888 | 0.04 |
