Protein : Qrob_P0013410.2 Q. robur
Protein Identifier  ? Qrob_P0013410.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) PTHR13140//PTHR13140:SF363 - MYOSIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 926  
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0 Synonyms

0 GO Terms

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103327961 12 923 + 912 Gaps:31 94.14 989 73.79 0.0 golgin candidate 5
blastp_kegg lcl|pper:PRUPE_ppa000843mg 16 923 + 908 Gaps:35 93.90 983 73.78 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_028772 17 923 + 907 Gaps:64 93.67 964 73.42 0.0 Golgin candidate 5 isoform 1
blastp_kegg lcl|mdm:103405445 12 923 + 912 Gaps:47 94.06 977 72.03 0.0 golgin candidate 5
blastp_kegg lcl|mdm:103443788 14 923 + 910 Gaps:43 93.87 979 71.82 0.0 golgin candidate 5-like
blastp_kegg lcl|pxb:103930440 12 923 + 912 Gaps:40 94.09 982 71.10 0.0 golgin candidate 5-like
blastp_kegg lcl|pxb:103930435 12 923 + 912 Gaps:40 94.09 982 71.10 0.0 golgin candidate 5-like
blastp_kegg lcl|pxb:103944851 14 923 + 910 Gaps:43 93.87 979 71.27 0.0 golgin candidate 5-like
blastp_kegg lcl|pop:POPTR_0003s05060g 14 923 + 910 Gaps:82 93.74 975 70.68 0.0 POPTRDRAFT_553737 hypothetical protein
blastp_kegg lcl|vvi:100250341 13 923 + 911 Gaps:70 93.97 978 70.73 0.0 golgin candidate 5-like
blastp_uniprot_sprot sp|Q0WVL7|GOGC5_ARATH 14 923 + 910 Gaps:70 94.56 956 66.59 0.0 Golgin candidate 5 OS Arabidopsis thaliana GN GC5 PE 1 SV 1
blastp_uniprot_sprot sp|P82094|TMF1_HUMAN 375 920 + 546 Gaps:102 55.26 1093 31.29 1e-43 TATA element modulatory factor OS Homo sapiens GN TMF1 PE 1 SV 2
blastp_uniprot_sprot sp|B9EKI3|TMF1_MOUSE 375 920 + 546 Gaps:102 55.36 1091 30.96 2e-40 TATA element modulatory factor OS Mus musculus GN Tmf1 PE 1 SV 2
rpsblast_cdd gnl|CDD|192987 800 920 + 121 none 100.00 121 43.80 3e-27 pfam12325 TMF_TATA_bd TATA element modulatory factor 1 TATA binding. This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6 a ubiquitous ras-like GTP-binding Golgi protein and contribute to Golgi organisation in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.
rpsblast_cdd gnl|CDD|162739 296 919 + 624 Gaps:254 69.13 1179 51.41 2e-13 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|162740 330 785 + 456 Gaps:195 61.43 1164 37.20 1e-12 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|179385 331 740 + 410 Gaps:71 51.25 880 38.58 8e-11 PRK02224 PRK02224 chromosome segregation protein Provisional.
rpsblast_cdd gnl|CDD|31389 282 919 + 638 Gaps:112 72.06 1163 34.49 1e-10 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|173412 278 765 + 488 Gaps:47 23.27 2084 34.43 1e-10 PTZ00121 PTZ00121 MAEBL Provisional.
rpsblast_cdd gnl|CDD|30768 326 914 + 589 Gaps:37 64.10 908 19.24 2e-07 COG0419 SbcC ATPase involved in DNA repair [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|180249 329 573 + 245 Gaps:47 39.78 646 29.96 2e-07 PRK05771 PRK05771 V-type ATP synthase subunit I Validated.
rpsblast_kog gnl|CDD|39872 11 923 + 913 Gaps:95 94.69 961 49.78 1e-108 KOG4673 KOG4673 KOG4673 Transcription factor TMF TATA element modulatory factor [Transcription].
rpsblast_kog gnl|CDD|35383 293 916 + 624 Gaps:324 56.11 1930 45.52 4e-14 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].
rpsblast_kog gnl|CDD|36214 425 785 + 361 Gaps:26 25.91 1293 18.81 1e-08 KOG0996 KOG0996 KOG0996 Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35241 353 717 + 365 Gaps:41 29.45 1141 21.13 3e-08 KOG0018 KOG0018 KOG0018 Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin subunit SMC1) [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35832 380 748 + 369 Gaps:17 27.03 1317 17.98 5e-08 KOG0612 KOG0612 KOG0612 Rho-associated coiled-coil containing protein kinase [Signal transduction mechanisms].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 175 194 20 PTHR13140 none none none
PANTHER 297 512 216 PTHR13140:SF363 none none none
Coils 891 919 29 Coil none none none
PANTHER 698 802 105 PTHR13140 none none none
Coils 442 505 64 Coil none none none
PANTHER 538 673 136 PTHR13140 none none none
Coils 532 574 43 Coil none none none
PANTHER 297 512 216 PTHR13140 none none none
PANTHER 698 802 105 PTHR13140:SF363 none none none
Coils 825 867 43 Coil none none none
Pfam 423 495 73 PF12329 none TATA element modulatory factor 1 DNA binding IPR022092
Coils 578 606 29 Coil none none none
Coils 397 418 22 Coil none none none
PANTHER 538 673 136 PTHR13140:SF363 none none none
Coils 613 743 131 Coil none none none
Coils 205 226 22 Coil none none none
Pfam 802 920 119 PF12325 none TATA element modulatory factor 1 TATA binding IPR022091
PANTHER 821 923 103 PTHR13140 none none none
Coils 332 388 57 Coil none none none
PANTHER 821 923 103 PTHR13140:SF363 none none none
PANTHER 175 194 20 PTHR13140:SF363 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting