Protein : Qrob_P0013380.2 Q. robur
Protein Identifier  ? Qrob_P0013380.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=52) PF01535//PF13041//PF14432 - PPR repeat // PPR repeat family // DYW family of nucleic acid deaminases Gene Prediction Quality  validated
Protein length 

Sequence

Length: 643  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241261 1 642 + 642 Gaps:8 100.00 648 77.93 0.0 pentatricopeptide repeat-containing protein At2g27610-like
blastp_kegg lcl|gmx:100782325 1 642 + 642 Gaps:11 98.59 640 76.70 0.0 putative pentatricopeptide repeat-containing protein At3g23330-like
blastp_kegg lcl|cit:102617710 7 642 + 636 Gaps:5 98.91 644 75.35 0.0 pentatricopeptide repeat-containing protein At3g46790 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_005G169000g 26 642 + 617 Gaps:7 98.89 631 76.28 0.0 hypothetical protein
blastp_kegg lcl|cam:101513205 33 642 + 610 Gaps:3 99.67 615 75.53 0.0 putative pentatricopeptide repeat-containing protein At3g23330-like
blastp_kegg lcl|sly:101268748 65 642 + 578 none 95.38 606 78.55 0.0 pentatricopeptide repeat-containing protein At2g27610-like
blastp_kegg lcl|cmo:103500579 40 642 + 603 Gaps:7 92.83 642 76.01 0.0 pentatricopeptide repeat-containing protein At4g21065-like
blastp_kegg lcl|mtr:MTR_2g101710 51 642 + 592 Gaps:16 96.45 620 75.75 0.0 Pentatricopeptide repeat-containing protein
blastp_kegg lcl|csv:101220566 70 642 + 573 none 99.83 574 77.49 0.0 pentatricopeptide repeat-containing protein At3g46790 chloroplastic-like
blastp_kegg lcl|sot:102603237 62 642 + 581 none 96.51 602 77.97 0.0 pentatricopeptide repeat-containing protein At3g46790 chloroplastic-like
blastp_uniprot_sprot sp|Q9STF3|PP265_ARATH 59 642 + 584 Gaps:8 90.11 657 44.43 2e-178 Pentatricopeptide repeat-containing protein At3g46790 chloroplastic OS Arabidopsis thaliana GN CRR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW63|PP251_ARATH 47 642 + 596 Gaps:87 99.72 715 45.58 2e-178 Putative pentatricopeptide repeat-containing protein At3g23330 OS Arabidopsis thaliana GN PCMP-H32 PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZUW3|PP172_ARATH 70 642 + 573 Gaps:17 95.16 868 46.13 7e-175 Pentatricopeptide repeat-containing protein At2g27610 OS Arabidopsis thaliana GN PCMP-H60 PE 2 SV 1
blastp_uniprot_sprot sp|A8MQA3|PP330_ARATH 72 642 + 571 Gaps:15 95.29 595 49.74 2e-174 Pentatricopeptide repeat-containing protein At4g21065 OS Arabidopsis thaliana GN PCMP-H28 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LTV8|PP224_ARATH 67 642 + 576 Gaps:15 96.97 694 49.33 3e-169 Pentatricopeptide repeat-containing protein At3g12770 OS Arabidopsis thaliana GN PCMP-H43 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW32|PP258_ARATH 53 642 + 590 Gaps:47 96.21 659 50.79 1e-168 Pentatricopeptide repeat-containing protein At3g26782 mitochondrial OS Arabidopsis thaliana GN PCMP-H34 PE 2 SV 1
blastp_uniprot_sprot sp|Q3E6Q1|PPR32_ARATH 38 642 + 605 Gaps:40 99.01 809 50.56 3e-167 Pentatricopeptide repeat-containing protein At1g11290 OS Arabidopsis thaliana GN PCMP-H40 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LN01|PPR21_ARATH 68 642 + 575 Gaps:77 95.01 741 47.30 4e-166 Pentatricopeptide repeat-containing protein At1g08070 OS Arabidopsis thaliana GN PCMP-H12 PE 2 SV 1
blastp_uniprot_sprot sp|O81767|PP348_ARATH 72 642 + 571 Gaps:60 91.98 823 54.56 1e-165 Pentatricopeptide repeat-containing protein At4g33990 OS Arabidopsis thaliana GN EMB2758 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LIQ7|PP252_ARATH 71 642 + 572 Gaps:2 90.36 633 41.26 3e-162 Pentatricopeptide repeat-containing protein At3g24000 mitochondrial OS Arabidopsis thaliana GN PCMP-H87 PE 3 SV 1
rpsblast_cdd gnl|CDD|178630 68 642 + 575 Gaps:1 82.64 697 41.49 1e-154 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178626 11 640 + 630 Gaps:70 99.30 857 46.89 1e-148 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|206598 511 632 + 122 Gaps:23 97.41 116 45.13 2e-21 pfam14432 DYW_deaminase DYW family of nucleic acid deaminases. A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria plants Naegleria and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions which are independent lateral transfers contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
rpsblast_cdd gnl|CDD|178757 70 470 + 401 Gaps:123 34.06 1060 38.50 1e-09 PLN03218 PLN03218 maturation of RBCL 1 Provisional.
rpsblast_cdd gnl|CDD|205222 134 383 + 250 Gaps:1 98.00 50 40.82 1e-07 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 336 382 47 PF13041 none PPR repeat family IPR002885
Pfam 134 181 48 PF13041 none PPR repeat family IPR002885
ProSiteProfiles 336 370 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
SUPERFAMILY 221 259 39 SSF48452 none none none
SUPERFAMILY 453 496 44 SSF48452 none none none
ProSiteProfiles 169 203 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Gene3D 339 371 33 G3DSA:1.25.40.10 none none IPR011990
Gene3D 407 491 85 G3DSA:1.25.40.10 none none IPR011990
Gene3D 143 252 110 G3DSA:1.25.40.10 none none IPR011990
PANTHER 66 642 577 PTHR24015:SF75 none none none
TIGRFAM 137 169 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 237 270 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 338 367 30 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
ProSiteProfiles 134 168 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 438 468 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 406 436 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 204 234 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 210 234 25 PF01535 none PPR repeat IPR002885
Pfam 476 504 29 PF01535 none PPR repeat IPR002885
Pfam 410 435 26 PF01535 none PPR repeat IPR002885
Pfam 237 266 30 PF01535 none PPR repeat IPR002885
Pfam 519 632 114 PF14432 none DYW family of nucleic acid deaminases none
ProSiteProfiles 235 269 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 472 506 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 66 642 577 PTHR24015 none none none
ProSiteProfiles 305 335 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 83   Mitochondrion 3 0.045 0.751 NON-PLANT 83