Protein : Qrob_P0013340.2 Q. robur
Protein Identifier  ? Qrob_P0013340.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=102) PF03140 - Plant protein of unknown function Gene Prediction Quality  validated
Protein length 

Sequence

Length: 491  
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0 Synonyms

0 GO Terms

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253232 44 486 + 443 Gaps:53 94.56 478 44.47 2e-96 UPF0481 protein At3g47200-like
blastp_kegg lcl|vvi:100246366 42 486 + 445 Gaps:62 94.98 498 38.90 7e-85 UPF0481 protein At3g47200-like
blastp_kegg lcl|tcc:TCM_041494 24 486 + 463 Gaps:61 96.34 492 35.02 2e-71 UPF0481 protein putative
blastp_kegg lcl|pop:POPTR_0003s18000g 71 485 + 415 Gaps:25 94.29 420 36.87 3e-68 POPTRDRAFT_757996 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10029965mg 70 486 + 417 Gaps:19 96.63 416 36.07 1e-67 hypothetical protein
blastp_kegg lcl|tcc:TCM_006050 59 481 + 423 Gaps:29 72.54 579 36.67 5e-67 hypothetical protein
blastp_kegg lcl|rcu:RCOM_2161170 25 486 + 462 Gaps:31 96.96 461 36.02 9e-67 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10028367mg 48 486 + 439 Gaps:26 90.62 469 34.59 6e-66 hypothetical protein
blastp_kegg lcl|mdm:103449402 73 486 + 414 Gaps:26 95.24 420 36.25 3e-65 UPF0481 protein At3g47200-like
blastp_kegg lcl|pmum:103339851 73 483 + 411 Gaps:26 88.03 451 36.02 7e-65 UPF0481 protein At3g47200
blastp_uniprot_sprot sp|Q9SD53|Y3720_ARATH 73 485 + 413 Gaps:22 87.18 476 33.49 1e-47 UPF0481 protein At3g47200 OS Arabidopsis thaliana GN At3g47200 PE 1 SV 1
blastp_uniprot_sprot sp|P0C897|Y3264_ARATH 73 416 + 344 Gaps:18 47.83 529 31.23 1e-11 Putative UPF0481 protein At3g02645 OS Arabidopsis thaliana GN At3g02645 PE 3 SV 1
rpsblast_cdd gnl|CDD|190538 75 472 + 398 Gaps:23 100.00 387 38.50 2e-88 pfam03140 DUF247 Plant protein of unknown function. The function of the plant proteins constituting this family is unknown.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 49 486 438 PTHR31549:SF0 none none none
Phobius 485 490 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 459 459 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 75 471 397 PF03140 none Plant protein of unknown function IPR004158
PANTHER 49 486 438 PTHR31549 none none none
Coils 127 148 22 Coil none none none
Phobius 460 484 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 462 484 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting