Protein : Qrob_P0013010.2 Q. robur
Protein Identifier  ? Qrob_P0013010.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0330//KOG0331//KOG0337//KOG0342//KOG0343//KOG0345//KOG0346//KOG0350//KOG0353//KOG4150 - ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent RNA helicase pitchoune [RNA processing and modification]. // RNA Helicase [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // RNA helicase [RNA processing and modification]. // DEAD-box ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent DNA helicase [General function prediction only]. // Predicted ATP-dependent RNA helicase [RNA processing and modification]. Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 203  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

49 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa020942mg 2 200 + 199 none 18.95 1045 79.80 5e-84 hypothetical protein
blastp_kegg lcl|pmum:103338655 2 200 + 199 none 16.17 1231 79.40 2e-83 putative ATP-dependent helicase hrq1
blastp_kegg lcl|tcc:TCM_014362 2 200 + 199 none 16.72 1208 79.70 1e-81 Nucleic acid binding ATP-dependent helicases ATP binding helicases ATP-dependent helicases isoform 1
blastp_kegg lcl|pxb:103930312 2 200 + 199 none 15.66 1271 76.88 3e-79 putative ATP-dependent helicase hrq1
blastp_kegg lcl|mdm:103455446 2 200 + 199 none 15.66 1271 77.39 3e-79 putative ATP-dependent helicase hrq1
blastp_kegg lcl|vvi:100257644 2 200 + 199 none 16.17 1231 78.89 2e-78 putative ATP-dependent helicase HRQ1-like
blastp_kegg lcl|cic:CICLE_v10018555mg 2 200 + 199 none 16.37 1216 79.40 2e-78 hypothetical protein
blastp_kegg lcl|cit:102626625 2 200 + 199 none 16.10 1236 79.40 2e-78 putative ATP-dependent helicase HRQ1-like
blastp_kegg lcl|rcu:RCOM_1467520 2 200 + 199 none 16.74 1189 78.39 7e-77 dead box ATP-dependent RNA helicase putative
blastp_kegg lcl|fve:101294083 2 200 + 199 none 16.22 1227 74.37 1e-76 LOW QUALITY PROTEIN: putative ATP-dependent helicase HRQ1-like
blastp_pdb 2zja_A 22 128 + 107 Gaps:5 15.00 720 32.41 3e-09 mol:protein length:720 Putative ski2-type helicase
blastp_pdb 2zj8_A 22 128 + 107 Gaps:5 15.00 720 32.41 3e-09 mol:protein length:720 Putative ski2-type helicase
blastp_pdb 2zj5_A 22 128 + 107 Gaps:5 15.00 720 32.41 3e-09 mol:protein length:720 Putative ski2-type helicase
blastp_pdb 2zj2_A 22 128 + 107 Gaps:5 15.00 720 32.41 3e-09 mol:protein length:720 Putative ski2-type helicase
blastp_pdb 2z0m_A 23 145 + 123 Gaps:7 34.42 337 29.31 3e-07 mol:protein length:337 337aa long hypothetical ATP-dependent RNA hel
blastp_pdb 3ly5_B 21 96 + 76 Gaps:5 30.92 262 33.33 2e-06 mol:protein length:262 ATP-dependent RNA helicase DDX18
blastp_pdb 3ly5_A 21 96 + 76 Gaps:5 30.92 262 33.33 2e-06 mol:protein length:262 ATP-dependent RNA helicase DDX18
blastp_pdb 2p6u_A 18 126 + 109 Gaps:5 14.81 702 30.77 3e-06 mol:protein length:702 afuHEL308 HELICASE
blastp_pdb 2p6r_A 18 126 + 109 Gaps:5 14.81 702 30.77 3e-06 mol:protein length:702 afUHEL308 HELICASE
blastp_uniprot_sprot sp|P50830|YPRA_BACSU 3 163 + 161 none 21.50 749 42.86 2e-37 Uncharacterized ATP-dependent helicase YprA OS Bacillus subtilis (strain 168) GN yprA PE 3 SV 1
blastp_uniprot_sprot sp|Q05549|HRQ1_YEAST 2 163 + 162 Gaps:5 14.95 1077 42.24 2e-31 Putative ATP-dependent helicase HRQ1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN HRQ1 PE 1 SV 1
blastp_uniprot_sprot sp|O13983|HRQ1_SCHPO 11 163 + 153 Gaps:3 14.68 1063 41.67 4e-28 Putative ATP-dependent helicase hrq1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN hrq1 PE 3 SV 4
blastp_uniprot_sprot sp|Q58969|Y1574_METJA 2 156 + 155 Gaps:7 23.10 684 29.11 4e-11 Uncharacterized ATP-dependent helicase MJ1574 OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ1574 PE 3 SV 1
blastp_uniprot_sprot sp|Q9V0A9|HELS_PYRAB 23 147 + 125 Gaps:25 19.86 715 30.99 9e-10 Putative ski2-type helicase OS Pyrococcus abyssi (strain GE5 / Orsay) GN PYRAB08810 PE 3 SV 1
blastp_uniprot_sprot sp|O59025|HELS_PYRHO 22 147 + 126 Gaps:25 20.00 715 29.37 5e-09 Putative ski2-type helicase OS Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN PH1280 PE 3 SV 1
blastp_uniprot_sprot sp|O73946|HELS_PYRFU 22 128 + 107 Gaps:5 15.00 720 32.41 1e-08 Putative ski2-type helicase OS Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN PF0677 PE 1 SV 1
blastp_uniprot_sprot sp|Q8TL39|HELS_METAC 22 120 + 99 Gaps:6 13.56 730 36.36 3e-08 Putative ski2-type helicase OS Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN MA_3203 PE 3 SV 1
blastp_uniprot_sprot sp|Q5JGV6|HELS_THEKO 18 128 + 111 Gaps:7 9.78 1125 35.45 3e-08 Putative ski2-type helicase OS Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN TK1332 PE 3 SV 1
blastp_uniprot_sprot sp|Q0W6L1|HELS_UNCMA 26 138 + 113 Gaps:25 18.11 740 33.58 9e-08 Putative ski2-type helicase OS Uncultured methanogenic archaeon RC-I GN UNCMA_22030 PE 3 SV 1
rpsblast_cdd gnl|CDD|163529 3 163 + 161 Gaps:5 21.29 742 46.84 1e-45 TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 200 199 PTHR24031 none none none
Gene3D 17 150 134 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 22 158 137 SSF52540 none none IPR027417
SMART 35 202 168 SM00487 none DEAD-like helicases superfamily IPR014001
Pfam 41 149 109 PF00270 none DEAD/DEAH box helicase IPR011545
ProSiteProfiles 47 202 156 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
PANTHER 2 200 199 PTHR24031:SF122 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting