Protein : Qrob_P0010840.2 Q. robur
Protein Identifier  ? Qrob_P0010840.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=17) PF04535 - Domain of unknown function (DUF588) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 153  
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0 Synonyms

0 GO Terms

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10029477mg 2 152 + 151 none 97.42 155 90.07 3e-93 hypothetical protein
blastp_kegg lcl|cit:102615728 2 152 + 151 none 97.42 155 90.07 3e-93 CASP-like protein Os03g0767900-like
blastp_kegg lcl|pop:POPTR_0004s15650g 1 152 + 152 none 100.00 152 89.47 4e-93 POPTRDRAFT_818072 hypothetical protein
blastp_kegg lcl|mdm:103449798 1 152 + 152 none 96.20 158 88.82 9e-93 CASP-like protein Os03g0767900
blastp_kegg lcl|pop:POPTR_0009s11340g 1 152 + 152 none 100.00 152 88.82 7e-92 POPTRDRAFT_649477 integral membrane family protein
blastp_kegg lcl|pxb:103937566 1 152 + 152 none 96.20 158 88.16 1e-91 CASP-like protein Os03g0767900
blastp_kegg lcl|pxb:103964144 1 152 + 152 none 96.20 158 87.50 7e-91 CASP-like protein Os03g0767900
blastp_kegg lcl|fve:101309685 1 152 + 152 Gaps:1 100.00 153 87.58 2e-90 CASP-like protein Os03g0767900-like
blastp_kegg lcl|gmx:100810360 1 152 + 152 none 98.06 155 87.50 5e-90 CASP-like protein Os03g0767900-like
blastp_kegg lcl|rcu:RCOM_0938640 1 152 + 152 none 100.00 152 85.53 6e-90 hypothetical protein
blastp_uniprot_sprot sp|Q10EJ2|CSPLU_ORYSJ 16 151 + 136 none 87.18 156 69.12 2e-57 CASP-like protein Os03g0767900 OS Oryza sativa subsp. japonica GN Os03g0767900 PE 2 SV 1
blastp_uniprot_sprot sp|B8BPI2|CSPLU_ORYSI 16 151 + 136 none 87.18 156 68.38 3e-56 CASP-like protein OsI_38237 OS Oryza sativa subsp. indica GN OsI_38237 PE 2 SV 1
blastp_uniprot_sprot sp|D7LTJ4|CSPLN_ARALL 1 152 + 152 none 98.70 154 56.58 5e-53 CASP-like protein ARALYDRAFT_485429 OS Arabidopsis lyrata subsp. lyrata GN ARALYDRAFT_485429 PE 3 SV 2
blastp_uniprot_sprot sp|P0CB17|CSPLH_ARATH 1 152 + 152 none 98.70 154 55.92 7e-52 CASP-like protein At3g50810 OS Arabidopsis thaliana GN At3g50810 PE 2 SV 1
blastp_uniprot_sprot sp|Q66GI1|CSPLT_ARATH 1 152 + 152 Gaps:7 98.03 152 59.06 8e-48 CASP-like protein At4g37235 OS Arabidopsis thaliana GN At4g37235 PE 2 SV 1
blastp_uniprot_sprot sp|B6U300|CSPLH_MAIZE 16 151 + 136 none 85.53 159 66.91 1e-46 CASP-like protein 12 OS Zea mays PE 2 SV 2
blastp_uniprot_sprot sp|P0DI71|CSPL3_GINBI 1 148 + 148 Gaps:1 82.58 178 50.34 7e-42 CASP-like protein 3 OS Ginkgo biloba GN gba_locus_13664 PE 3 SV 1
blastp_uniprot_sprot sp|Q3ECT8|CSPL4_ARATH 1 132 + 132 Gaps:1 86.18 152 60.31 1e-40 CASP-like protein At1g49405 OS Arabidopsis thaliana GN At1g49405 PE 3 SV 1
blastp_uniprot_sprot sp|D5ACW4|CSPLB_PICSI 1 137 + 137 Gaps:1 74.73 182 47.06 2e-35 CASP-like protein 11 (Fragment) OS Picea sitchensis PE 2 SV 2
blastp_uniprot_sprot sp|B6TM88|CSPLJ_MAIZE 1 152 + 152 Gaps:4 100.00 154 44.81 3e-31 CASP-like protein 14 OS Zea mays PE 2 SV 1
rpsblast_cdd gnl|CDD|191020 6 137 + 132 Gaps:20 100.00 150 25.33 3e-16 pfam04535 DUF588 Domain of unknown function (DUF588). This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 106 125 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 12 30 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 150 152 3 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 59 77 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 31 36 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 126 149 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 9 137 129 PF04535 none Domain of unknown function (DUF588) IPR006702
Phobius 37 58 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 152 152 PTHR32021 none none none
PANTHER 1 152 152 PTHR32021:SF2 none none none
Phobius 78 105 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

4 Localization

Analysis Start End Length
TMHMM 77 99 22
TMHMM 48 70 22
TMHMM 13 35 22
TMHMM 127 149 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 142   Secretory pathway 5 0.510 0.084 NON-PLANT 142