Protein : Qrob_P0010800.2 Q. robur
Protein Identifier  ? Qrob_P0010800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PF05562 - Cold acclimation protein WCOR413 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 163  
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0 Synonyms

0 GO Terms

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s11290g 3 162 + 160 Gaps:40 93.02 215 59.00 3e-77 POPTRDRAFT_833083 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0938820 3 162 + 160 Gaps:39 98.51 202 59.80 3e-75 COR413-PM2 putative
blastp_kegg lcl|vvi:100248690 3 162 + 160 Gaps:39 98.51 202 58.29 7e-75 uncharacterized LOC100248690
blastp_kegg lcl|tcc:TCM_006298 3 162 + 160 Gaps:39 98.03 203 58.29 3e-74 Cold acclimation protein WCOR413-like protein beta form
blastp_kegg lcl|pop:POPTR_0004s15610g 3 162 + 160 Gaps:40 98.52 203 57.00 8e-74 POPTRDRAFT_712891 hypothetical protein
blastp_kegg lcl|pmum:103335494 1 162 + 162 Gaps:40 100.00 202 56.44 2e-70 cold-regulated 413 plasma membrane protein 1-like
blastp_kegg lcl|fve:101304727 1 162 + 162 Gaps:39 100.00 201 59.20 1e-69 cold-regulated 413 plasma membrane protein 1-like
blastp_kegg lcl|cmo:103498423 4 162 + 159 Gaps:39 98.02 202 56.06 1e-69 cold-regulated 413 plasma membrane protein 2-like
blastp_kegg lcl|csv:101203533 4 162 + 159 Gaps:39 98.02 202 56.06 3e-69 cold-regulated 413 plasma membrane protein 2-like
blastp_kegg lcl|csv:101212811 4 162 + 159 Gaps:39 98.02 202 56.06 3e-69 cold-regulated 413 plasma membrane protein 2-like
blastp_uniprot_sprot sp|Q9SVL6|CRPM2_ARATH 5 162 + 158 Gaps:40 97.54 203 51.01 9e-61 Cold-regulated 413 plasma membrane protein 2 OS Arabidopsis thaliana GN COR413PM2 PE 2 SV 1
blastp_uniprot_sprot sp|O23164|CRPM4_ARATH 1 162 + 162 Gaps:40 100.00 202 44.06 3e-54 Cold-regulated 413 plasma membrane protein 4 OS Arabidopsis thaliana GN At4g37220 PE 2 SV 2
blastp_uniprot_sprot sp|Q9XIM7|CRPM1_ARATH 10 158 + 149 Gaps:36 93.91 197 50.81 9e-49 Cold-regulated 413 plasma membrane protein 1 OS Arabidopsis thaliana GN COR413PM1 PE 1 SV 1
blastp_uniprot_sprot sp|O64834|CRPM3_ARATH 58 154 + 97 Gaps:2 52.38 189 44.44 4e-22 Cold-regulated 413 plasma membrane protein 3 OS Arabidopsis thaliana GN At2g23680 PE 2 SV 1
blastp_uniprot_sprot sp|F4I1G5|CRIM2_ARATH 56 147 + 92 Gaps:4 38.94 226 39.77 7e-10 Cold-regulated 413 inner membrane protein 2 chloroplastic OS Arabidopsis thaliana GN COR413IM2 PE 1 SV 1
rpsblast_cdd gnl|CDD|191305 6 150 + 145 Gaps:41 100.00 186 54.30 4e-52 pfam05562 WCOR413 Cold acclimation protein WCOR413. This family consists of several WCOR413-like plant cold acclimation proteins.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 56 150 95 PF05562 none Cold acclimation protein WCOR413 IPR008892
Pfam 9 55 47 PF05562 none Cold acclimation protein WCOR413 IPR008892
Phobius 140 158 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 159 162 4 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 80 99 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 47 47 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 74 79 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 105 120 16 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 100 104 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 121 139 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 48 73 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

4 Localization

Analysis Start End Length
TMHMM 80 99 19
TMHMM 140 159 19
TMHMM 106 125 19
TMHMM 48 70 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting