Protein : Qrob_P0010670.2 Q. robur
Protein Identifier  ? Qrob_P0010670.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0266//KOG0271//KOG0274//KOG0281//KOG0295//KOG0301//KOG0313//KOG0319//KOG0645//KOG0646 - WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // Cdc4 and related F-box and WD-40 proteins [General function prediction only]. // Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]. // WD40 repeat-containing protein [Function unknown]. // Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]. // Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. // WD40 repeat protein [General function prediction only]. // WD40 repeat protein [General function prediction only]. Code Enzyme  EC:2.7.11.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 487  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335488 1 480 + 480 Gaps:18 97.57 494 69.71 0.0 myosin heavy chain kinase C
blastp_kegg lcl|mdm:103411676 1 468 + 468 Gaps:24 96.67 480 69.83 0.0 vegetative incompatibility protein HET-E-1-like
blastp_kegg lcl|mdm:103449790 1 469 + 469 Gaps:26 96.88 480 69.46 0.0 myosin heavy chain kinase C-like
blastp_kegg lcl|tcc:TCM_006295 1 470 + 470 Gaps:25 96.77 464 72.38 0.0 Transducin/WD40 repeat-like superfamily protein
blastp_kegg lcl|cic:CICLE_v10028353mg 1 470 + 470 Gaps:40 99.79 473 70.13 0.0 hypothetical protein
blastp_kegg lcl|cit:102613174 1 470 + 470 Gaps:40 99.79 473 70.13 0.0 vegetative incompatibility protein HET-E-1-like
blastp_kegg lcl|pper:PRUPE_ppa016928mg 9 468 + 460 Gaps:26 94.61 482 70.83 0.0 hypothetical protein
blastp_kegg lcl|fve:101291793 9 466 + 458 Gaps:49 95.49 510 67.35 0.0 uncharacterized WD repeat-containing protein alr3466-like
blastp_kegg lcl|pop:POPTR_0009s11270g 16 464 + 449 Gaps:25 95.28 445 72.64 0.0 POPTRDRAFT_201517 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s15550g 1 462 + 462 Gaps:30 93.94 462 70.28 0.0 hypothetical protein
blastp_pdb 2xl3_B 139 459 + 321 Gaps:123 74.55 334 49.00 1e-13 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 139 459 + 321 Gaps:123 74.55 334 49.00 1e-13 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 139 459 + 321 Gaps:123 74.55 334 49.00 1e-13 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 139 459 + 321 Gaps:123 74.55 334 49.00 1e-13 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2gnq_A 139 459 + 321 Gaps:123 74.11 336 49.00 1e-13 mol:protein length:336 WD-repeat protein 5
blastp_pdb 3emh_A 139 459 + 321 Gaps:123 78.30 318 49.00 1e-13 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 2o9k_C 139 459 + 321 Gaps:123 79.55 313 49.00 1e-13 mol:protein length:313 WD repeat protein 5
blastp_pdb 2o9k_A 139 459 + 321 Gaps:123 79.55 313 49.00 1e-13 mol:protein length:313 WD repeat protein 5
blastp_pdb 2h9n_C 139 459 + 321 Gaps:123 79.55 313 49.00 1e-13 mol:protein length:313 WD-repeat protein 5
blastp_pdb 2h9n_A 139 459 + 321 Gaps:123 79.55 313 49.00 1e-13 mol:protein length:313 WD-repeat protein 5
blastp_uniprot_sprot sp|P90648|MHCKB_DICDI 130 456 + 327 Gaps:103 37.30 732 44.32 1e-21 Myosin heavy chain kinase B OS Dictyostelium discoideum GN mhkB PE 2 SV 1
blastp_uniprot_sprot sp|Q61FW2|SEL10_CAEBR 120 471 + 352 Gaps:101 48.73 589 46.34 2e-19 F-box/WD repeat-containing protein sel-10 OS Caenorhabditis briggsae GN sel-10 PE 3 SV 1
blastp_uniprot_sprot sp|Q17963|WDR51_CAEEL 49 455 + 407 Gaps:85 95.74 376 31.11 6e-19 WD repeat-containing protein wdr-5.1 OS Caenorhabditis elegans GN wdr-5.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q93794|SEL10_CAEEL 118 460 + 343 Gaps:122 56.22 587 41.21 1e-17 F-box/WD repeat-containing protein sel-10 OS Caenorhabditis elegans GN sel-10 PE 1 SV 3
blastp_uniprot_sprot sp|Q8MY12|MHCKC_DICDI 154 468 + 315 Gaps:116 35.00 780 39.93 2e-17 Myosin heavy chain kinase C OS Dictyostelium discoideum GN mhkC PE 1 SV 1
blastp_uniprot_sprot sp|Q9VZF4|FBXW7_DROME 117 459 + 343 Gaps:212 25.94 1326 47.09 9e-16 F-box/WD repeat-containing protein 7 OS Drosophila melanogaster GN ago PE 1 SV 1
blastp_uniprot_sprot sp|Q93847|YZLL_CAEEL 176 455 + 280 Gaps:40 69.37 395 28.83 2e-15 Uncharacterized WD repeat-containing protein K04G11.4 OS Caenorhabditis elegans GN K04G11.4 PE 4 SV 1
blastp_uniprot_sprot sp|A8X8C6|TG125_CAEBR 128 455 + 328 Gaps:72 78.80 368 30.69 3e-15 WD repeat-containing protein tag-125 OS Caenorhabditis briggsae GN tag-125 PE 4 SV 1
blastp_uniprot_sprot sp|Q6Q0C0|TRAF7_HUMAN 46 456 + 411 Gaps:120 48.96 670 36.28 5e-15 E3 ubiquitin-protein ligase TRAF7 OS Homo sapiens GN TRAF7 PE 1 SV 1
blastp_uniprot_sprot sp|Q8YRI1|YY46_NOSS1 129 459 + 331 Gaps:306 40.83 1526 46.55 6e-15 Uncharacterized WD repeat-containing protein alr3466 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr3466 PE 4 SV 1

29 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 271 307 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 233 265 33 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 370 400 31 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 409 454 46 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 163 192 30 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 128 154 27 PF00400 none WD domain, G-beta repeat IPR001680
SMART 407 455 49 SM00320 none WD40 repeats IPR001680
SMART 316 360 45 SM00320 none WD40 repeats IPR001680
SMART 155 192 38 SM00320 none WD40 repeats IPR001680
SMART 228 266 39 SM00320 none WD40 repeats IPR001680
SMART 269 307 39 SM00320 none WD40 repeats IPR001680
SMART 364 401 38 SM00320 none WD40 repeats IPR001680
SMART 117 154 38 SM00320 none WD40 repeats IPR001680
Gene3D 227 346 120 G3DSA:2.130.10.10 none none IPR015943
Gene3D 123 194 72 G3DSA:2.130.10.10 none none IPR015943
PRINTS 253 267 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 442 456 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 294 308 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
ProSiteProfiles 371 400 30 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PANTHER 229 466 238 PTHR22844 none none none
SUPERFAMILY 125 194 70 SSF50978 none none IPR017986
SUPERFAMILY 227 460 234 SSF50978 none none IPR017986
ProSiteProfiles 234 464 231 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PANTHER 82 196 115 PTHR22844:SF128 none none none
PANTHER 229 466 238 PTHR22844:SF128 none none none
ProSiteProfiles 276 307 32 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 234 275 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 347 459 113 G3DSA:2.130.10.10 none none IPR015943
PANTHER 82 196 115 PTHR22844 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting