Protein : Qrob_P0010550.2 Q. robur
Protein Identifier  ? Qrob_P0010550.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) PF00560//PF08263//PF12799 - Leucine Rich Repeat // Leucine rich repeat N-terminal domain // Leucine Rich repeats (2 copies) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 873  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259624 9 867 + 859 Gaps:154 98.79 993 44.65 0.0 receptor-like protein 12-like
blastp_kegg lcl|vvi:100245876 9 871 + 863 Gaps:154 98.77 973 46.20 0.0 receptor-like protein 12-like
blastp_kegg lcl|vvi:100250918 29 868 + 840 Gaps:82 98.65 886 46.34 0.0 receptor-like protein 12-like
blastp_kegg lcl|pop:POPTR_0016s13460g 11 867 + 857 Gaps:151 98.29 993 44.16 0.0 POPTRDRAFT_777931 leucine-rich repeat family protein
blastp_kegg lcl|pop:POPTR_0064s00220g 9 862 + 854 Gaps:159 98.98 979 44.99 0.0 leucine-rich repeat family protein
blastp_kegg lcl|pop:POPTR_0016s134801 24 856 + 833 Gaps:148 98.34 965 43.31 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0064s00270g 24 871 + 848 Gaps:66 96.64 894 45.25 0.0 Cf-4/9 disease resistance-like family protein
blastp_kegg lcl|pop:POPTR_0016s13470g 29 871 + 843 Gaps:148 99.58 961 42.42 0.0 POPTRDRAFT_577070 Cf-4/9 disease resistance-like family protein
blastp_kegg lcl|tcc:TCM_044742 29 863 + 835 Gaps:172 97.21 1003 42.67 0.0 Receptor like protein 6 putative
blastp_kegg lcl|pmum:103331652 14 863 + 850 Gaps:150 98.20 947 42.80 0.0 receptor-like protein 12
blastp_pdb 3rgz_A 43 793 + 751 Gaps:164 95.96 768 31.07 2e-47 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rgx_A 43 793 + 751 Gaps:164 95.96 768 31.07 2e-47 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rj0_A 43 793 + 751 Gaps:164 95.47 772 31.07 2e-47 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3riz_A 43 793 + 751 Gaps:164 95.47 772 31.07 2e-47 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 1ogq_A 30 791 + 762 Gaps:172 98.72 313 64.08 2e-15 mol:protein length:313 POLYGALACTURONASE INHIBITING PROTEIN
blastp_pdb 2omu_A 294 733 + 440 Gaps:92 68.61 462 53.31 4e-12 mol:protein length:462 Internalin-A
blastp_pdb 2omx_A 294 733 + 440 Gaps:85 68.61 462 51.74 1e-11 mol:protein length:462 Internalin-A
blastp_pdb 2omt_A 294 733 + 440 Gaps:85 68.61 462 51.74 2e-11 mol:protein length:462 Internalin-A
blastp_pdb 2omw_A 294 588 + 295 Gaps:49 67.46 461 43.41 3e-11 mol:protein length:461 Internalin-A
blastp_pdb 2omv_A 294 588 + 295 Gaps:49 67.46 461 43.41 3e-11 mol:protein length:461 Internalin-A
blastp_uniprot_sprot sp|Q9C9H7|RLP12_ARATH 16 862 + 847 Gaps:110 97.17 847 36.09 1e-127 Receptor-like protein 12 OS Arabidopsis thaliana GN RLP12 PE 2 SV 2
blastp_uniprot_sprot sp|O49318|Y2317_ARATH 51 803 + 753 Gaps:94 61.83 1124 36.26 2e-80 Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS Arabidopsis thaliana GN At2g33170 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FL28|FLS2_ARATH 193 795 + 603 Gaps:168 61.38 1173 38.75 3e-77 LRR receptor-like serine/threonine-protein kinase FLS2 OS Arabidopsis thaliana GN FLS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LVP0|Y5639_ARATH 90 806 + 717 Gaps:91 60.07 1102 49.09 4e-75 Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS Arabidopsis thaliana GN At5g63930 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LP24|Y1571_ARATH 91 774 + 684 Gaps:231 59.38 1120 53.08 6e-74 Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS Arabidopsis thaliana GN At1g35710 PE 2 SV 1
blastp_uniprot_sprot sp|C0LGQ5|GSO1_ARATH 35 793 + 759 Gaps:124 66.69 1249 30.13 2e-72 LRR receptor-like serine/threonine-protein kinase GSO1 OS Arabidopsis thaliana GN GSO1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZG8|Y4885_ARATH 5 789 + 785 Gaps:172 63.83 1045 35.83 6e-72 Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS Arabidopsis thaliana GN At4g08850 PE 1 SV 3
blastp_uniprot_sprot sp|Q9LHP4|RCH2_ARATH 72 787 + 716 Gaps:111 55.30 1141 35.50 3e-71 Receptor-like protein kinase 2 OS Arabidopsis thaliana GN RCH2 PE 1 SV 1
blastp_uniprot_sprot sp|P93194|RPK1_IPONI 59 829 + 771 Gaps:91 65.64 1109 32.28 1e-67 Receptor-like protein kinase OS Ipomoea nil GN INRPK1 PE 2 SV 2
blastp_uniprot_sprot sp|C0LGV1|RCH1_ARATH 74 801 + 728 Gaps:108 56.74 1135 34.78 1e-66 LRR receptor-like serine/threonine-protein kinase RCH1 OS Arabidopsis thaliana GN RCH1 PE 2 SV 1

43 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 725 738 14 PR00019 none Leucine-rich repeat signature none
PRINTS 605 618 14 PR00019 none Leucine-rich repeat signature none
PANTHER 712 871 160 PTHR24420:SF637 none none none
PANTHER 1 172 172 PTHR24420:SF637 none none none
PANTHER 394 503 110 PTHR24420:SF637 none none none
PANTHER 283 363 81 PTHR24420 none none none
PANTHER 394 503 110 PTHR24420 none none none
Pfam 34 85 52 PF08263 none Leucine rich repeat N-terminal domain IPR013210
Phobius 1 12 12 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 712 871 160 PTHR24420 none none none
PANTHER 1 172 172 PTHR24420 none none none
Pfam 704 739 36 PF12799 none Leucine Rich repeats (2 copies) IPR025875
SMART 321 347 27 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 416 437 22 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 369 390 22 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 464 496 33 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 725 748 24 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
Phobius 846 872 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 393 632 240 SSF52058 none none none
SUPERFAMILY 683 783 101 SSF52058 none none none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 13 20 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 821 845 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 26 820 795 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 203 224 22 PF00560 none Leucine Rich Repeat IPR001611
Pfam 116 139 24 PF00560 none Leucine Rich Repeat IPR001611
Pfam 604 626 23 PF00560 none Leucine Rich Repeat IPR001611
Pfam 299 321 23 PF00560 none Leucine Rich Repeat IPR001611
Gene3D 57 269 213 G3DSA:3.80.10.10 none none none

2 Localization

Analysis Start End Length
TMHMM 826 845 19
SignalP_EUK 1 25 24

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 2 0.800 0.124 NON-PLANT 25