Protein : Qrob_P0010540.2 Q. robur
Protein Identifier  ? Qrob_P0010540.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=38) KOG4422 - Uncharacterized conserved protein [Function unknown]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 540  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0939010 1 533 + 533 Gaps:171 99.84 643 66.36 0.0 pentatricopeptide repeat-containing protein putative
blastp_kegg lcl|pmum:103336418 16 538 + 523 Gaps:119 98.10 630 55.18 0.0 pentatricopeptide repeat-containing protein At2g15630 mitochondrial
blastp_kegg lcl|tcc:TCM_006286 1 534 + 534 Gaps:119 96.77 650 53.42 0.0 Pentatricopeptide repeat (PPR) superfamily protein putative isoform 1
blastp_kegg lcl|cic:CICLE_v10030406mg 1 534 + 534 Gaps:181 99.84 645 61.34 0.0 hypothetical protein
blastp_kegg lcl|cit:102619404 1 534 + 534 Gaps:181 99.84 645 61.34 0.0 pentatricopeptide repeat-containing protein At2g15630 mitochondrial-like
blastp_kegg lcl|mdm:103431757 1 538 + 538 Gaps:119 99.84 634 52.45 0.0 pentatricopeptide repeat-containing protein At2g15630 mitochondrial-like
blastp_kegg lcl|vvi:100250452 52 534 + 483 Gaps:107 89.94 656 53.56 0.0 pentatricopeptide repeat-containing protein At2g15630 mitochondrial-like
blastp_kegg lcl|pxb:103934401 1 538 + 538 Gaps:119 99.84 634 52.61 0.0 pentatricopeptide repeat-containing protein At2g15630 mitochondrial
blastp_kegg lcl|csv:101223163 19 532 + 514 Gaps:148 98.41 628 57.44 0.0 pentatricopeptide repeat-containing protein At2g15630 mitochondrial-like
blastp_kegg lcl|cmo:103495200 19 536 + 518 Gaps:111 99.20 628 51.20 0.0 pentatricopeptide repeat-containing protein At2g15630 mitochondrial
blastp_uniprot_sprot sp|Q9ZQF1|PP152_ARATH 27 531 + 505 Gaps:114 95.53 627 47.91 0.0 Pentatricopeptide repeat-containing protein At2g15630 mitochondrial OS Arabidopsis thaliana GN At2g15630 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LFC5|PP360_ARATH 74 532 + 459 Gaps:51 89.99 729 52.13 1e-71 Pentatricopeptide repeat-containing protein At5g01110 OS Arabidopsis thaliana GN At5g01110 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FIX3|PP407_ARATH 76 530 + 455 Gaps:307 94.91 747 40.90 5e-68 Pentatricopeptide repeat-containing protein At5g39710 OS Arabidopsis thaliana GN EMB2745 PE 2 SV 1
blastp_uniprot_sprot sp|P0C894|PP143_ARATH 62 532 + 471 Gaps:63 87.25 761 44.13 6e-67 Putative pentatricopeptide repeat-containing protein At2g02150 OS Arabidopsis thaliana GN At2g02150 PE 3 SV 1
blastp_uniprot_sprot sp|Q0WVK7|PPR12_ARATH 138 532 + 395 Gaps:104 73.41 741 52.21 2e-64 Pentatricopeptide repeat-containing protein At1g05670 mitochondrial OS Arabidopsis thaliana GN At1g05670 PE 2 SV 1
blastp_uniprot_sprot sp|O04504|PPR27_ARATH 56 535 + 480 Gaps:129 92.08 606 44.09 5e-64 Pentatricopeptide repeat-containing protein At1g09820 OS Arabidopsis thaliana GN At1g09820 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LSL9|PP445_ARATH 73 532 + 460 Gaps:172 91.37 915 47.73 2e-63 Pentatricopeptide repeat-containing protein At5g65560 OS Arabidopsis thaliana GN At5g65560 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAN5|PPR98_ARATH 153 538 + 386 Gaps:31 96.09 614 61.36 3e-63 Pentatricopeptide repeat-containing protein At1g63080 mitochondrial OS Arabidopsis thaliana GN At1g63080 PE 2 SV 1
blastp_uniprot_sprot sp|O04491|PPR26_ARATH 153 535 + 383 Gaps:60 73.64 607 51.45 7e-63 Putative pentatricopeptide repeat-containing protein At1g09680 OS Arabidopsis thaliana GN At1g09680 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SXD1|PPR91_ARATH 166 531 + 366 Gaps:20 87.30 630 59.09 4e-61 Pentatricopeptide repeat-containing protein At1g62670 mitochondrial OS Arabidopsis thaliana GN At1g62670 PE 3 SV 2
rpsblast_cdd gnl|CDD|178757 154 531 + 378 Gaps:119 51.32 1060 41.73 1e-36 PLN03218 PLN03218 maturation of RBCL 1 Provisional.
rpsblast_cdd gnl|CDD|178630 158 524 + 367 Gaps:70 69.44 697 25.00 5e-20 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178626 162 529 + 368 Gaps:142 70.48 857 39.74 4e-19 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|205222 202 529 + 328 none 100.00 50 88.00 7e-18 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
rpsblast_cdd gnl|CDD|205109 371 473 + 103 none 100.00 34 79.41 2e-09 pfam12854 PPR_1 PPR repeat. This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
rpsblast_cdd gnl|CDD|211604 413 446 + 34 none 97.14 35 67.65 2e-08 TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This model describes a domain called the PPR motif or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins particularly those sorted to chloroplasts or mitochondria. The pfam hmm pfam01535 domain of unknown function DUF17 consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide) pfam pfam00515 a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
rpsblast_cdd gnl|CDD|144943 413 443 + 31 none 100.00 31 58.06 3e-07 pfam01535 PPR PPR repeat. This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR.
rpsblast_kog gnl|CDD|39623 167 524 + 358 Gaps:43 30.72 625 37.50 4e-09 KOG4422 KOG4422 KOG4422 Uncharacterized conserved protein [Function unknown].

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 166 527 362 PTHR24015:SF302 none none none
Pfam 410 453 44 PF13041 none PPR repeat family IPR002885
Pfam 204 251 48 PF13041 none PPR repeat family IPR002885
Pfam 272 320 49 PF13041 none PPR repeat family IPR002885
Pfam 482 527 46 PF13041 none PPR repeat family IPR002885
TIGRFAM 275 309 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 413 446 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 343 376 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 484 516 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 171 202 32 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 378 412 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 240 274 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 448 481 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
PANTHER 84 147 64 PTHR24015 none none none
PANTHER 15 58 44 PTHR24015 none none none
Pfam 172 200 29 PF01535 none PPR repeat IPR002885
ProSiteProfiles 115 149 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 481 515 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 84 147 64 PTHR24015:SF302 none none none
PANTHER 15 58 44 PTHR24015:SF302 none none none
SUPERFAMILY 168 280 113 SSF48452 none none none
SUPERFAMILY 348 483 136 SSF48452 none none none
ProSiteProfiles 341 375 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 411 445 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 371 403 33 PF12854 none PPR repeat IPR002885
Gene3D 177 290 114 G3DSA:1.25.40.10 none none IPR011990
Gene3D 344 507 164 G3DSA:1.25.40.10 none none IPR011990
PANTHER 166 527 362 PTHR24015 none none none
ProSiteProfiles 376 410 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 238 272 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting