Protein : Qrob_P0010530.2 Q. robur
Protein Identifier  ? Qrob_P0010530.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR16007//PTHR16007:SF14 - EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED // SUBFAMILY NOT NAMED (PTHR16007:SF14) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 296  
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0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103431758 1 295 + 295 none 100.00 295 75.59 5e-160 uncharacterized LOC103431758
blastp_kegg lcl|pxb:103934399 1 295 + 295 none 100.00 295 74.92 9e-159 transmembrane protein 45B
blastp_kegg lcl|pmum:103335457 1 295 + 295 none 100.00 295 73.22 3e-156 uncharacterized LOC103335457
blastp_kegg lcl|fve:101303381 1 295 + 295 Gaps:2 100.00 297 72.73 2e-154 uncharacterized protein LOC101303381
blastp_kegg lcl|tcc:TCM_006285 1 295 + 295 none 92.48 319 74.24 5e-154 Family of Uncharacterized protein function
blastp_kegg lcl|cic:CICLE_v10028950mg 1 295 + 295 none 100.00 295 70.51 1e-152 hypothetical protein
blastp_kegg lcl|cit:102619991 1 295 + 295 none 100.00 295 70.51 1e-152 transmembrane epididymal protein 1-like
blastp_kegg lcl|pop:POPTR_0009s11210g 1 284 + 284 Gaps:11 100.00 295 72.20 7e-147 POPTRDRAFT_1087010 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0939020 1 279 + 279 none 94.90 294 72.04 2e-145 hypothetical protein
blastp_kegg lcl|gmx:100808451 1 292 + 292 Gaps:1 99.32 295 67.24 2e-139 transmembrane protein 45B-like
blastp_uniprot_sprot sp|Q497B2|TM45B_RAT 1 225 + 225 Gaps:28 79.50 278 28.05 9e-06 Transmembrane protein 45B OS Rattus norvegicus GN Tmem45b PE 2 SV 1
rpsblast_cdd gnl|CDD|113585 116 258 + 143 Gaps:9 97.81 137 45.52 6e-32 pfam04819 DUF716 Family of unknown function (DUF716). This family is equally distributed in both metazoa and plants. Annotation associated with a member from Nicotiana tabacum suggest that it may be involved in response to viral attack in plants. However no clear function has been assigned to this family.

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 170 175 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 176 199 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 31 56 26 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 57 78 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 115 136 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 137 147 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 200 241 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 12 30 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 148 169 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 118 258 141 PF04819 none Family of unknown function (DUF716) IPR006904
Phobius 90 108 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 282 282 PTHR16007 none none IPR006904
PANTHER 1 282 282 PTHR16007:SF14 none none none
Phobius 262 295 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 242 261 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 109 114 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 79 89 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

7 Localization

Analysis Start End Length
TMHMM 89 106 17
TMHMM 148 170 22
TMHMM 240 262 22
TMHMM 111 133 22
TMHMM 4 23 19
TMHMM 57 79 22
TMHMM 177 199 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 28   Secretory pathway 1 0.981 0.044 NON-PLANT 28