Protein : Qrob_P0010520.2 Q. robur
Protein Identifier  ? Qrob_P0010520.2 Organism . Name  Quercus robur
Score  87.2 Score Type  egn
Protein Description  (M=1) PF08041 - PetM family of cytochrome b6f complex subunit 7 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 122  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0009512 cytochrome b6f complex Complex that transfers electrons from reduced plastoquinone to oxidized plastocyanin and translocates protons from the stroma to the lumen. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome f, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100500243 5 121 + 117 none 94.35 124 73.50 1e-55 uncharacterized LOC100500243
blastp_kegg lcl|fve:101314888 2 120 + 119 Gaps:3 94.40 125 76.27 6e-54 uncharacterized protein LOC101314888
blastp_kegg lcl|fve:101301039 2 121 + 120 Gaps:1 95.20 125 73.11 1e-53 uncharacterized protein LOC101301039
blastp_kegg lcl|pop:POPTR_0009s11190g 2 121 + 120 Gaps:3 95.90 122 74.36 2e-53 hypothetical protein
blastp_kegg lcl|vvi:100255593 2 121 + 120 Gaps:1 96.03 126 72.73 3e-53 uncharacterized LOC100255593
blastp_kegg lcl|fve:101303081 2 120 + 119 Gaps:1 94.40 125 73.73 3e-52 uncharacterized protein LOC101303081
blastp_kegg lcl|pper:PRUPE_ppa013368mg 2 113 + 112 Gaps:4 87.30 126 78.18 6e-49 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10030439mg 2 121 + 120 none 96.00 125 66.67 3e-48 hypothetical protein
blastp_kegg lcl|cit:102620918 2 121 + 120 none 96.00 125 66.67 3e-48 uncharacterized LOC102620918
blastp_kegg lcl|pop:POPTR_0004s15440g 2 121 + 120 Gaps:3 95.90 122 73.50 6e-47 cytochrome b6f complex subuni family protein
blastp_uniprot_sprot sp|P80883|PETM_SPIOL 84 119 + 36 none 100.00 36 80.56 3e-11 Cytochrome b6-f complex subunit 7 (Fragment) OS Spinacia oleracea GN petM PE 1 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 88 88 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 87 113 27 PF08041 none PetM family of cytochrome b6f complex subunit 7 IPR012595
Phobius 112 121 10 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 86 118 33 SSF103441 none none none
Phobius 89 111 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 89 111 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting