Protein : Qrob_P0010260.2 Q. robur
Protein Identifier  ? Qrob_P0010260.2 Organism . Name  Quercus robur
Score  93.1 Score Type  egn
Protein Description  (M=1) K02357 - elongation factor EF-Ts Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1326  
Kegg Orthology  K02357
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0003746 translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
GO:0006414 translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103501035 1 1325 + 1325 Gaps:166 100.00 1171 64.30 0.0 probable GPI-anchored adhesin-like protein PGA55
blastp_kegg lcl|vvi:100262932 1 1320 + 1320 Gaps:29 99.65 1135 74.01 0.0 uncharacterized LOC100262932
blastp_kegg lcl|tcc:TCM_037834 1 1324 + 1324 Gaps:30 94.55 1064 74.16 0.0 Elongation factor Ts isoform 1
blastp_kegg lcl|pvu:PHAVU_004G168100g 1 1322 + 1322 Gaps:76 100.00 1134 66.05 0.0 hypothetical protein
blastp_kegg lcl|mdm:103452789 1 1320 + 1320 Gaps:193 99.46 1121 73.63 0.0 probable GPI-anchored adhesin-like protein PGA55
blastp_kegg lcl|gmx:100804285 1 1320 + 1320 Gaps:84 99.65 1135 69.14 0.0 enolase-phosphatase E1-like
blastp_kegg lcl|pxb:103943869 1 1325 + 1325 Gaps:117 98.75 1044 72.74 0.0 uncharacterized LOC103943869
blastp_kegg lcl|pmum:103340883 1 1315 + 1315 Gaps:72 97.80 1090 72.61 0.0 uncharacterized LOC103340883
blastp_kegg lcl|cic:CICLE_v10007553mg 347 1312 + 966 Gaps:88 97.21 754 73.67 0.0 hypothetical protein
blastp_kegg lcl|fve:101312281 1 1316 + 1316 Gaps:38 99.22 1023 70.94 0.0 uncharacterized protein LOC101312281
blastp_pdb 1aip_H 882 1312 + 431 Gaps:4 96.94 196 59.47 8e-51 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 1aip_G 882 1312 + 431 Gaps:4 96.94 196 59.47 8e-51 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 1aip_D 882 1312 + 431 Gaps:4 96.94 196 59.47 8e-51 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 1aip_C 882 1312 + 431 Gaps:4 96.94 196 59.47 8e-51 mol:protein length:196 ELONGATION FACTOR TS
blastp_pdb 1tfe_A 933 1312 + 380 Gaps:4 97.24 145 60.28 3e-37 mol:protein length:145 ELONGATION FACTOR TS
blastp_pdb 1efu_D 876 1317 + 442 Gaps:36 85.82 282 50.00 4e-20 mol:protein length:282 ELONGATION FACTOR TS
blastp_pdb 1efu_B 876 1317 + 442 Gaps:36 85.82 282 50.00 4e-20 mol:protein length:282 ELONGATION FACTOR TS
blastp_pdb 3mmp_C 876 1317 + 442 Gaps:34 36.58 678 47.98 5e-19 mol:protein length:678 Elongation factor Tu 2 Elongation factor Ts
blastp_pdb 3mmp_A 876 1317 + 442 Gaps:34 36.58 678 47.98 5e-19 mol:protein length:678 Elongation factor Tu 2 Elongation factor Ts
blastp_pdb 3avy_A 876 1317 + 442 Gaps:34 19.08 1289 48.37 1e-18 mol:protein length:1289 Elongation factor Ts Elongation factor Tu L
blastp_uniprot_sprot sp|B1XQQ0|EFTS_SYNP2 876 1317 + 442 Gaps:2 99.08 218 70.83 3e-90 Elongation factor Ts OS Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|B7K735|EFTS_CYAP7 876 1324 + 449 Gaps:5 87.41 286 66.00 4e-89 Elongation factor Ts OS Cyanothece sp. (strain PCC 7424) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|A5GTG7|EFTS_SYNR3 876 1316 + 441 Gaps:2 99.54 217 68.98 1e-88 Elongation factor Ts OS Synechococcus sp. (strain RCC307) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|Q0IAN8|EFTS_SYNS3 876 1316 + 441 Gaps:2 98.62 218 68.37 7e-88 Elongation factor Ts OS Synechococcus sp. (strain CC9311) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|Q7VCB5|EFTS_PROMA 876 1316 + 441 Gaps:2 99.54 217 68.06 2e-87 Elongation factor Ts OS Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|Q31BC3|EFTS_PROM9 878 1318 + 441 Gaps:2 96.79 218 71.56 3e-87 Elongation factor Ts OS Prochlorococcus marinus (strain MIT 9312) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|A5GLD9|EFTS_SYNPW 876 1322 + 447 Gaps:4 98.17 219 72.09 4e-87 Elongation factor Ts OS Synechococcus sp. (strain WH7803) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|Q7TUA9|EFTS_PROMP 878 1318 + 441 Gaps:2 96.79 218 72.99 4e-87 Elongation factor Ts OS Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|Q3AKA4|EFTS_SYNSC 876 1322 + 447 Gaps:4 98.64 220 71.89 5e-87 Elongation factor Ts OS Synechococcus sp. (strain CC9605) GN tsf PE 3 SV 1
blastp_uniprot_sprot sp|A3PCG2|EFTS_PROM0 878 1318 + 441 Gaps:2 96.79 218 72.04 8e-87 Elongation factor Ts OS Prochlorococcus marinus (strain MIT 9301) GN tsf PE 3 SV 1

42 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 1118 1218 101 TIGR00116 none tsf: translation elongation factor Ts IPR001816
TIGRFAM 966 1089 124 TIGR00116 none tsf: translation elongation factor Ts IPR001816
TIGRFAM 876 970 95 TIGR00116 none tsf: translation elongation factor Ts IPR001816
Gene3D 143 218 76 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 142 218 77 SSF50249 none none IPR012340
PANTHER 1172 1316 145 PTHR11741 none none IPR001816
Pfam 931 971 41 PF00889 none Elongation factor TS IPR014039
Pfam 1207 1313 107 PF00889 none Elongation factor TS IPR014039
Pfam 966 1072 107 PF00889 none Elongation factor TS IPR014039
Pfam 1172 1212 41 PF00889 none Elongation factor TS IPR014039
SUPERFAMILY 251 339 89 SSF50249 none none IPR012340
SUPERFAMILY 931 1072 142 SSF54713 none none IPR014039
Hamap 1118 1325 208 MF_00050 none Elongation factor Ts [tsf]. IPR001816
PANTHER 878 984 107 PTHR11741 none none IPR001816
SMART 262 333 72 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
SMART 146 217 72 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
ProSiteProfiles 264 333 70 PS50126 none S1 domain profile. IPR003029
Pfam 1120 1156 37 PF00627 none UBA/TS-N domain IPR000449
Pfam 878 915 38 PF00627 none UBA/TS-N domain IPR000449
Gene3D 931 984 54 G3DSA:3.30.479.20 none none IPR014039
Gene3D 1172 1225 54 G3DSA:3.30.479.20 none none IPR014039
Gene3D 1031 1075 45 G3DSA:3.30.479.20 none none IPR014039
Gene3D 1272 1316 45 G3DSA:3.30.479.20 none none IPR014039
ProSiteProfiles 148 217 70 PS50126 none S1 domain profile. IPR003029
SUPERFAMILY 1172 1313 142 SSF54713 none none IPR014039
SUPERFAMILY 1119 1170 52 SSF46934 none none IPR009060
Hamap 876 1089 214 MF_00050 none Elongation factor Ts [tsf]. IPR001816
Gene3D 987 1029 43 G3DSA:1.10.286.20 none none none
Gene3D 1228 1270 43 G3DSA:1.10.286.20 none none none
Gene3D 259 336 78 G3DSA:2.40.50.140 none none IPR012340

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting