Protein : Qrob_P0010200.2 Q. robur
Protein Identifier  ? Qrob_P0010200.2 Organism . Name  Quercus robur
Protein Description  (M=24) K14484 - auxin-responsive protein IAA Alias (in v1)  Qrob_P0773130.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 309  
Kegg Orthology  K14484
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100254204 1 308 + 308 Gaps:20 100.00 320 76.56 6e-158 auxin-responsive protein IAA27-like
blastp_kegg lcl|pxb:103929398 1 308 + 308 Gaps:33 100.00 319 75.86 6e-157 auxin-responsive protein IAA27-like
blastp_kegg lcl|mdm:103449497 1 308 + 308 Gaps:33 100.00 319 75.55 9e-156 IAA12 auxin-responsive protein IAA27
blastp_kegg lcl|pmum:103340885 1 308 + 308 Gaps:21 100.00 319 73.98 2e-155 auxin-responsive protein IAA27
blastp_kegg lcl|pxb:103943871 1 308 + 308 Gaps:32 100.00 318 74.53 6e-154 auxin-responsive protein IAA27-like
blastp_kegg lcl|fve:101311700 1 308 + 308 Gaps:17 100.00 303 75.58 7e-152 auxin-responsive protein IAA27-like
blastp_kegg lcl|pvu:PHAVU_004G166400g 1 308 + 308 Gaps:27 100.00 307 77.85 1e-151 hypothetical protein
blastp_kegg lcl|gmx:100803754 1 308 + 308 Gaps:27 100.00 307 76.22 4e-149 auxin-responsive protein IAA27-like
blastp_kegg lcl|cmo:103501033 1 308 + 308 Gaps:11 100.00 307 74.27 6e-149 auxin-responsive protein IAA27
blastp_kegg lcl|csv:101215632 1 308 + 308 Gaps:12 100.00 306 74.18 2e-148 auxin-responsive protein IAA27-like
blastp_uniprot_sprot sp|Q9ZSY8|IAA27_ARATH 1 308 + 308 Gaps:37 99.34 305 65.02 6e-113 Auxin-responsive protein IAA27 OS Arabidopsis thaliana GN IAA27 PE 1 SV 1
blastp_uniprot_sprot sp|Q38826|IAA8_ARATH 6 307 + 302 Gaps:74 92.83 321 57.72 8e-95 Auxin-responsive protein IAA8 OS Arabidopsis thaliana GN IAA8 PE 1 SV 1
blastp_uniprot_sprot sp|Q38827|IAA9_ARATH 6 307 + 302 Gaps:51 90.24 338 51.48 1e-82 Auxin-responsive protein IAA9 OS Arabidopsis thaliana GN IAA9 PE 1 SV 1
blastp_uniprot_sprot sp|P0C132|IAA30_ORYSJ 32 308 + 277 Gaps:17 98.92 277 51.82 8e-75 Auxin-responsive protein IAA30 OS Oryza sativa subsp. japonica GN IAA30 PE 2 SV 1
blastp_uniprot_sprot sp|O24407|IAA16_ARATH 33 307 + 275 Gaps:77 99.15 236 58.12 3e-73 Auxin-responsive protein IAA16 OS Arabidopsis thaliana GN IAA16 PE 1 SV 1
blastp_uniprot_sprot sp|Q5Z749|IAA21_ORYSJ 155 308 + 154 Gaps:4 59.40 266 71.52 7e-72 Auxin-responsive protein IAA21 OS Oryza sativa subsp. japonica GN IAA21 PE 2 SV 1
blastp_uniprot_sprot sp|Q38832|IAA14_ARATH 33 308 + 276 Gaps:50 100.00 228 60.09 1e-71 Auxin-responsive protein IAA14 OS Arabidopsis thaliana GN IAA14 PE 1 SV 2
blastp_uniprot_sprot sp|P13089|AUX28_SOYBN 33 308 + 276 Gaps:37 100.00 243 56.38 2e-69 Auxin-induced protein AUX28 OS Glycine max GN AUX28 PE 2 SV 1
blastp_uniprot_sprot sp|Q38825|IAA7_ARATH 33 308 + 276 Gaps:64 97.94 243 58.40 1e-68 Auxin-responsive protein IAA7 OS Arabidopsis thaliana GN IAA7 PE 1 SV 1
blastp_uniprot_sprot sp|Q75GB1|IAA17_ORYSJ 1 308 + 308 Gaps:22 80.93 257 69.23 3e-64 Auxin-responsive protein IAA17 OS Oryza sativa subsp. japonica GN IAA17 PE 2 SV 1
rpsblast_cdd gnl|CDD|202200 33 300 + 268 Gaps:80 100.00 188 71.28 4e-72 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 33 300 268 PF02309 none AUX/IAA family IPR003311
ProSiteProfiles 188 290 103 PS51745 none PB1 domain profile. IPR000270
SUPERFAMILY 185 289 105 SSF54277 none none none
PANTHER 1 83 83 PTHR31734:SF4 none none none
PANTHER 111 308 198 PTHR31734 none none none
PANTHER 1 83 83 PTHR31734 none none none
PANTHER 111 308 198 PTHR31734:SF4 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting