Protein : Qrob_P0010110.2 Q. robur
Protein Identifier  ? Qrob_P0010110.2 Organism . Name  Quercus robur
Score  6.0 Score Type  egn
Protein Description  (M=6) PF00385 - Chromo (CHRromatin Organisation MOdifier) domain Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 368  
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0 Synonyms

0 GO Terms

10 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_006024 2 365 + 364 Gaps:40 15.20 2342 57.02 2e-104 Chromatin remodeling complex subunit
blastp_kegg lcl|vvi:100247555 2 365 + 364 Gaps:37 15.33 2355 54.85 3e-101 uncharacterized LOC100247555
blastp_kegg lcl|pper:PRUPE_ppa000031mg 34 365 + 332 Gaps:38 14.10 2327 54.88 4e-88 hypothetical protein
blastp_kegg lcl|mdm:103446012 2 365 + 364 Gaps:37 16.68 2356 47.33 6e-87 uncharacterized LOC103446012
blastp_kegg lcl|pxb:103932431 2 365 + 364 Gaps:33 16.65 2360 47.58 3e-86 uncharacterized LOC103932431
blastp_kegg lcl|pxb:103945172 2 365 + 364 Gaps:33 16.65 2360 47.33 6e-86 uncharacterized LOC103945172
blastp_kegg lcl|mdm:103435301 2 365 + 364 Gaps:53 15.93 2342 49.87 6e-85 uncharacterized LOC103435301
blastp_kegg lcl|pmum:103325506 34 365 + 332 Gaps:38 14.08 2330 53.35 2e-83 uncharacterized LOC103325506
blastp_kegg lcl|cic:CICLE_v10014010mg 4 365 + 362 Gaps:44 15.28 2356 51.11 3e-82 hypothetical protein
blastp_kegg lcl|cit:102618865 4 365 + 362 Gaps:44 15.28 2356 51.11 3e-82 uncharacterized LOC102618865

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 332 366 35 SSF54160 none none IPR016197
ProSiteProfiles 309 367 59 PS50013 none Chromo and chromo shadow domain profile. IPR000953
Pfam 325 366 42 PF00385 none Chromo (CHRromatin Organisation MOdifier) domain IPR023780
Gene3D 319 366 48 G3DSA:2.40.50.40 none none none
SMART 315 367 53 SM00298 none Chromatin organization modifier domain IPR000953

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting