Protein : Qrob_P0010070.2 Q. robur
Protein Identifier  ? Qrob_P0010070.2 Organism . Name  Quercus robur
Score  7.2 Score Type  egn
Protein Description  (M=3) KOG4831 - Unnamed protein [Function unknown]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 132  
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0 Synonyms

0 GO Terms

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101313734 1 129 + 129 Gaps:3 98.51 134 78.03 3e-56 transmembrane protein 234 homolog
blastp_kegg lcl|pxb:103929393 1 129 + 129 Gaps:3 98.51 134 75.76 5e-56 transmembrane protein 234 homolog
blastp_kegg lcl|mdm:103406779 1 129 + 129 Gaps:7 98.55 138 75.00 1e-54 transmembrane protein 234 homolog
blastp_kegg lcl|pmum:103340879 1 129 + 129 Gaps:7 98.55 138 77.21 2e-54 transmembrane protein 234 homolog
blastp_kegg lcl|cic:CICLE_v10009852mg 1 129 + 129 Gaps:5 97.81 137 71.64 3e-54 hypothetical protein
blastp_kegg lcl|cit:102630946 1 129 + 129 Gaps:5 97.81 137 71.64 3e-54 transmembrane protein 234 homolog
blastp_kegg lcl|pper:PRUPE_ppa013135mg 1 129 + 129 Gaps:7 98.55 138 76.47 4e-54 hypothetical protein
blastp_kegg lcl|tcc:TCM_037830 1 129 + 129 Gaps:5 98.53 136 77.61 6e-54 hypothetical protein
blastp_kegg lcl|cam:101502888 5 129 + 125 Gaps:7 97.78 135 66.67 4e-53 transmembrane protein 234 homolog
blastp_kegg lcl|sot:102581260 1 129 + 129 Gaps:1 98.48 132 72.31 4e-52 transmembrane protein 234 homolog
blastp_uniprot_sprot sp|Q54ZG7|TM234_DICDI 4 131 + 128 Gaps:13 94.53 128 36.36 8e-17 Transmembrane protein 234 homolog OS Dictyostelium discoideum GN DDB_G0277575 PE 3 SV 1
blastp_uniprot_sprot sp|A0NGI1|TM234_ANOGA 5 129 + 125 Gaps:7 84.29 140 35.59 6e-13 Transmembrane protein 234 homolog OS Anopheles gambiae GN AGAP012180 PE 3 SV 1
blastp_uniprot_sprot sp|Q8WY98|TM234_HUMAN 15 129 + 115 Gaps:7 65.85 164 31.48 4e-10 Transmembrane protein 234 OS Homo sapiens GN TMEM234 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBQ9|TM234_PONAB 15 129 + 115 Gaps:7 65.06 166 31.48 5e-10 Transmembrane protein 234 OS Pongo abelii GN TMEM234 PE 2 SV 1
blastp_uniprot_sprot sp|A7YW81|TM234_BOVIN 15 129 + 115 Gaps:7 77.14 140 31.48 1e-08 Transmembrane protein 234 OS Bos taurus GN TMEM234 PE 2 SV 1
blastp_uniprot_sprot sp|Q8R1E7|TM234_MOUSE 15 129 + 115 Gaps:7 77.14 140 29.63 1e-08 Transmembrane protein 234 OS Mus musculus GN Tmem234 PE 2 SV 1
rpsblast_cdd gnl|CDD|151155 8 130 + 123 Gaps:11 100.00 112 35.71 2e-18 pfam10639 UPF0546 Uncharacterized protein family UPF0546. This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
rpsblast_kog gnl|CDD|40028 1 129 + 129 Gaps:6 98.40 125 52.85 3e-30 KOG4831 KOG4831 KOG4831 Unnamed protein [Function unknown].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 8 130 123 PF10639 none Uncharacterised protein family UPF0546 IPR018908
Phobius 112 130 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 86 106 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 80 85 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 58 79 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 131 131 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 57 57 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 49 129 81 SSF103481 none none none
Phobius 107 111 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
TMHMM 110 129 19
TMHMM 84 106 22
TMHMM 57 79 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting