Protein : Qrob_P0009980.2 Q. robur
Protein Identifier  ? Qrob_P0009980.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR14155:SF78 - RING-H2 FINGER PROTEIN ATL43 (PTHR14155:SF78) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 423  
Kegg Orthology  K10664
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244010 1 422 + 422 Gaps:13 100.00 423 65.48 0.0 E3 ubiquitin-protein ligase ATL42-like
blastp_kegg lcl|pvu:PHAVU_004G169200g 1 422 + 422 Gaps:8 100.00 426 61.97 1e-177 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa026744mg 16 412 + 397 Gaps:9 99.02 408 65.10 3e-176 hypothetical protein
blastp_kegg lcl|pmum:103340874 6 412 + 407 Gaps:9 93.88 441 63.04 3e-175 E3 ubiquitin-protein ligase ATL42-like
blastp_kegg lcl|pmum:103340873 6 412 + 407 Gaps:10 91.50 447 65.04 2e-174 E3 ubiquitin-protein ligase ATL42
blastp_kegg lcl|cic:CICLE_v10010254mg 14 422 + 409 Gaps:20 100.00 415 65.78 2e-174 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa019638mg 6 412 + 407 Gaps:10 97.85 418 64.55 1e-173 hypothetical protein
blastp_kegg lcl|cit:102618502 1 422 + 422 Gaps:20 100.00 428 65.42 2e-173 E3 ubiquitin-protein ligase ATL42-like
blastp_kegg lcl|pop:POPTR_0018s09200g 1 422 + 422 Gaps:11 100.00 427 61.12 4e-173 POPTRDRAFT_578510 hypothetical protein
blastp_kegg lcl|tcc:TCM_037822 1 407 + 407 Gaps:9 96.71 426 62.62 1e-167 RING/U-box superfamily protein putative
blastp_pdb 1iym_A 107 156 + 50 none 90.91 55 56.00 1e-16 mol:protein length:55 EL5
blastp_pdb 1x4j_A 94 158 + 65 Gaps:1 85.33 75 42.19 5e-11 mol:protein length:75 RING finger protein 38
blastp_pdb 2kiz_A 110 162 + 53 Gaps:1 75.36 69 44.23 7e-10 mol:protein length:69 E3 ubiquitin-protein ligase Arkadia
blastp_pdb 2ect_A 100 160 + 61 Gaps:5 82.05 78 43.75 8e-10 mol:protein length:78 RING finger protein 126
blastp_pdb 2ep4_A 111 156 + 46 Gaps:1 60.81 74 46.67 2e-06 mol:protein length:74 RING finger protein 24
blastp_uniprot_sprot sp|Q5XF85|ATL42_ARATH 34 411 + 378 Gaps:51 90.05 432 52.70 4e-113 E3 ubiquitin-protein ligase ATL42 OS Arabidopsis thaliana GN ATL42 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SL78|ATL12_ARATH 28 408 + 381 Gaps:67 88.72 390 52.31 2e-100 Putative RING-H2 finger protein ATL12 OS Arabidopsis thaliana GN ATL12 PE 3 SV 1
blastp_uniprot_sprot sp|Q5EAE9|ATL43_ARATH 33 269 + 237 Gaps:56 71.50 407 37.80 1e-41 RING-H2 finger protein ATL43 OS Arabidopsis thaliana GN ATL43 PE 2 SV 2
blastp_uniprot_sprot sp|Q8W571|ATL32_ARATH 9 153 + 145 Gaps:20 47.37 323 41.83 1e-27 RING-H2 finger protein ATL32 OS Arabidopsis thaliana GN ATL32 PE 2 SV 3
blastp_uniprot_sprot sp|Q84W40|ATL11_ARATH 13 158 + 146 Gaps:8 38.12 404 38.96 3e-27 RING-H2 finger protein ATL11 OS Arabidopsis thaliana GN ATL11 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LF64|ATL52_ARATH 39 176 + 138 Gaps:12 41.44 362 40.67 4e-26 RING-H2 finger protein ATL52 OS Arabidopsis thaliana GN ATL52 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GW38|ATL47_ARATH 33 153 + 121 Gaps:17 37.40 369 39.86 8e-25 RING-H2 finger protein ATL47 OS Arabidopsis thaliana GN ATL47 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C7I1|ATL34_ARATH 4 159 + 156 Gaps:28 49.54 327 38.27 8e-24 RING-H2 finger protein ATL34 OS Arabidopsis thaliana GN ATL34 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SRQ8|ATL51_ARATH 35 153 + 119 Gaps:25 40.45 356 37.50 1e-23 RING-H2 finger protein ATL51 OS Arabidopsis thaliana GN ATL51 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FHG8|ATL50_ARATH 33 177 + 145 Gaps:14 74.76 210 33.76 2e-23 Putative RING-H2 finger protein ATL50 OS Arabidopsis thaliana GN ATL50 PE 3 SV 1
rpsblast_cdd gnl|CDD|205816 110 155 + 46 Gaps:1 97.83 46 48.89 2e-13 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_cdd gnl|CDD|29102 110 156 + 47 Gaps:4 100.00 45 42.22 6e-10 cd00162 RING RING-finger (Really Interesting New Gene) domain a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C probably involved in mediating protein-protein interactions identified in a proteins with a wide range of functions such as viral replication signal transduction and development has two variants the C3HC4-type and a C3H2C3-type (RING-H2 finger) which have different cysteine/histidine pattern a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
rpsblast_cdd gnl|CDD|35099 108 158 + 51 Gaps:2 13.64 374 47.06 8e-10 COG5540 COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|205013 111 153 + 43 Gaps:9 71.23 73 34.62 2e-08 pfam12678 zf-rbx1 RING-H2 zinc finger. There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein of which this domain is the conserved region participates in diverse functions relevant to chromosome metabolism and cell cycle control.
rpsblast_cdd gnl|CDD|206094 107 154 + 48 Gaps:3 100.00 45 44.44 2e-07 pfam13923 zf-C3HC4_2 Zinc finger C3HC4 type (RING finger).

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 17 20 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 4 16 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProSiteProfiles 111 153 43 PS50089 none Zinc finger RING-type profile. IPR001841
Gene3D 106 156 51 G3DSA:3.30.40.10 none none IPR013083
PANTHER 32 200 169 PTHR14155:SF78 none none none
Phobius 59 422 364 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 36 58 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 90 161 72 SSF57850 none none none
Phobius 21 35 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 32 200 169 PTHR14155 none none none
Pfam 110 153 44 PF13639 none Ring finger domain IPR001841
SMART 111 152 42 SM00184 none Ring finger IPR001841

3 Localization

Analysis Start End Length
TMHMM 36 58 22
SignalP_EUK 1 20 19
TMHMM 4 23 19

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 1 0.988 0.027 NON-PLANT 20