Protein : Qrob_P0009910.2 Q. robur
Protein Identifier  ? Qrob_P0009910.2 Organism . Name  Quercus robur
Score  99.3 Score Type  egn
Protein Description  (M=1) PTHR31846:SF8 - CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC (PTHR31846:SF8) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 780  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103943884 5 779 + 775 Gaps:40 98.97 773 61.96 0.0 CRS2-associated factor 1 chloroplastic
blastp_kegg lcl|mdm:103400629 5 779 + 775 Gaps:41 98.96 772 60.86 0.0 CRS2-associated factor 1 chloroplastic-like
blastp_kegg lcl|pmum:103340870 1 779 + 779 Gaps:91 100.00 748 63.90 0.0 CRS2-associated factor 1 chloroplastic
blastp_kegg lcl|fve:101315373 1 779 + 779 Gaps:55 100.00 804 58.83 0.0 CRS2-associated factor 1 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa001872mg 1 779 + 779 Gaps:89 100.00 750 63.07 0.0 hypothetical protein
blastp_kegg lcl|mdm:103449600 5 779 + 775 Gaps:44 98.97 777 60.08 0.0 CRS2-associated factor 1 chloroplastic-like
blastp_kegg lcl|tcc:TCM_037817 1 779 + 779 Gaps:50 100.00 767 60.10 0.0 RNA-binding CRS1 / YhbY domain-containing protein putative
blastp_kegg lcl|cit:102617663 23 779 + 757 Gaps:95 96.30 837 55.83 0.0 CRS2-associated factor 1 chloroplastic-like
blastp_kegg lcl|vvi:100259402 1 779 + 779 Gaps:89 100.00 752 62.37 0.0 CRS2-associated factor 1 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0024s00430g 1 779 + 779 Gaps:72 100.00 731 62.24 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q9SL79|CAF1P_ARATH 10 779 + 770 Gaps:57 95.58 701 56.27 0.0 CRS2-associated factor 1 chloroplastic OS Arabidopsis thaliana GN At2g20020 PE 2 SV 2
blastp_uniprot_sprot sp|Q5VMQ5|CAF1P_ORYSJ 98 779 + 682 Gaps:62 95.01 701 50.00 0.0 CRS2-associated factor 1 chloroplastic OS Oryza sativa subsp. japonica GN Os01g0495900 PE 2 SV 1
blastp_uniprot_sprot sp|Q84N49|CAF1P_MAIZE 84 779 + 696 Gaps:76 98.81 674 48.50 0.0 CRS2-associated factor 1 chloroplastic OS Zea mays GN CAF1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LDA9|CAF2P_ARATH 94 558 + 465 Gaps:28 83.51 564 49.89 9e-139 CRS2-associated factor 2 chloroplastic OS Arabidopsis thaliana GN At1g23400 PE 2 SV 1
blastp_uniprot_sprot sp|Q657G7|CAF2P_ORYSJ 110 474 + 365 Gaps:16 62.77 607 51.71 2e-125 CRS2-associated factor 2 chloroplastic OS Oryza sativa subsp. japonica GN Os01g0323300 PE 3 SV 1
blastp_uniprot_sprot sp|Q84N48|CAF2P_MAIZE 117 510 + 394 Gaps:23 67.92 611 47.47 3e-119 CRS2-associated factor 2 chloroplastic OS Zea mays GN CAF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6Z4U2|CAF1M_ORYSJ 165 488 + 324 Gaps:28 70.56 428 49.67 7e-83 CRS2-associated factor 1 mitochondrial OS Oryza sativa subsp. japonica GN Os08g0174900 PE 3 SV 1
blastp_uniprot_sprot sp|Q8VYD9|CAF1M_ARATH 155 479 + 325 Gaps:29 74.57 405 47.35 8e-83 CRS2-associated factor 1 mitochondrial OS Arabidopsis thaliana GN At4g31010 PE 2 SV 1
blastp_uniprot_sprot sp|Q0J7J7|CAF2M_ORYSJ 165 465 + 301 Gaps:39 73.77 366 50.00 1e-77 CRS2-associated factor 2 mitochondrial OS Oryza sativa subsp. japonica GN Os08g0188000 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FFU1|CAF2M_ARATH 160 465 + 306 Gaps:39 76.82 358 48.36 1e-75 CRS2-associated factor 2 mitochondrial OS Arabidopsis thaliana GN At5g54890 PE 2 SV 1
rpsblast_cdd gnl|CDD|190184 263 464 + 202 none 100.00 84 38.10 5e-19 pfam01985 CRS1_YhbY CRS1 / YhbY (CRM) domain. Escherichia coli YhbY is associated with pre-50S ribosomal subunits which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria that this function has been maintained in extant prokaryotes and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C) which binds to 16S rRNA in the 30S ribosome.
rpsblast_cdd gnl|CDD|198171 263 464 + 202 none 100.00 84 38.10 3e-17 smart01103 CRS1_YhbY Escherichia coli YhbY is associated with pre-50S ribosomal subunits which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria that this function has been maintained in extant prokaryotes and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C) which binds to 16S rRNA in the 30S ribosome.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 381 470 90 SSF75471 none none IPR001890
SUPERFAMILY 262 356 95 SSF75471 none none IPR001890
SMART 263 346 84 SM01103 none none IPR001890
SMART 381 464 84 SM01103 none none IPR001890
ProSiteProfiles 379 475 97 PS51295 none CRM domain profile. IPR001890
PANTHER 40 119 80 PTHR31846 none none none
PANTHER 135 524 390 PTHR31846 none none none
Pfam 263 346 84 PF01985 none CRS1 / YhbY (CRM) domain IPR001890
Pfam 381 464 84 PF01985 none CRS1 / YhbY (CRM) domain IPR001890
Gene3D 262 354 93 G3DSA:3.30.110.60 none none IPR001890
Gene3D 381 469 89 G3DSA:3.30.110.60 none none IPR001890
ProSiteProfiles 261 357 97 PS51295 none CRM domain profile. IPR001890
PANTHER 40 119 80 PTHR31846:SF8 none none none
PANTHER 135 524 390 PTHR31846:SF8 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 14   Secretory pathway 4 0.499 0.098 NON-PLANT 14