Protein : Qrob_P0009300.2 Q. robur
Protein Identifier  ? Qrob_P0009300.2 Organism . Name  Quercus robur
Score  78.4 Score Type  egn
Protein Description  (M=20) PTHR12663:SF3 - gb def: precocious dissociation of sister chromatids, pds5p [saccharomyces cerevisiae] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 252  
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Sequence Feature Displayer

Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10024823mg 16 236 + 221 none 26.76 826 64.71 1e-90 hypothetical protein
blastp_kegg lcl|cit:102614026 16 235 + 220 none 23.71 928 64.55 2e-89 muscle M-line assembly protein unc-89-like
blastp_kegg lcl|rcu:RCOM_0470870 16 236 + 221 none 34.80 635 61.99 6e-88 hypothetical protein
blastp_kegg lcl|pop:POPTR_0006s27920g 14 235 + 222 none 31.58 703 57.21 7e-81 hypothetical protein
blastp_kegg lcl|cmo:103500024 25 251 + 227 Gaps:1 84.44 270 56.14 8e-81 sister chromatid cohesion protein PDS5 homolog B-B-like
blastp_kegg lcl|tcc:TCM_027420 1 229 + 229 Gaps:7 27.11 819 65.77 4e-80 Chloroplast-like protein isoform 1
blastp_kegg lcl|fve:101296742 14 228 + 215 none 22.37 961 60.93 1e-79 uncharacterized protein LOC101296742
blastp_kegg lcl|csv:101223650 25 236 + 212 none 80.00 265 57.08 4e-78 sister chromatid cohesion protein PDS5 homolog B-B-like
blastp_kegg lcl|gmx:100790092 14 235 + 222 none 24.21 917 55.41 7e-78 dentin sialophosphoprotein-like
blastp_kegg lcl|pvu:PHAVU_009G087800g 14 235 + 222 none 25.26 879 56.31 2e-77 hypothetical protein
blastp_uniprot_sprot sp|Q9HFF5|PDS5_SCHPO 61 209 + 149 Gaps:1 12.45 1205 29.33 4e-15 Sister chromatid cohesion protein pds5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pds5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5U241|PD5BB_XENLA 71 236 + 166 Gaps:2 11.48 1464 22.62 4e-10 Sister chromatid cohesion protein PDS5 homolog B-B OS Xenopus laevis GN pds5b-b PE 2 SV 2
blastp_uniprot_sprot sp|Q04264|PDS5_YEAST 34 206 + 173 Gaps:4 13.39 1277 25.15 4e-10 Sister chromatid cohesion protein PDS5 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PDS5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6TRW4|PDS5B_RAT 71 236 + 166 Gaps:2 11.61 1447 22.62 5e-10 Sister chromatid cohesion protein PDS5 homolog B OS Rattus norvegicus GN Pds5b PE 2 SV 2
blastp_uniprot_sprot sp|Q5F3U9|PDS5B_CHICK 71 236 + 166 Gaps:2 11.90 1412 22.62 5e-10 Sister chromatid cohesion protein PDS5 homolog B OS Gallus gallus GN PDS5B PE 2 SV 3
blastp_uniprot_sprot sp|Q9NTI5|PDS5B_HUMAN 71 236 + 166 Gaps:2 11.61 1447 22.62 5e-10 Sister chromatid cohesion protein PDS5 homolog B OS Homo sapiens GN PDS5B PE 1 SV 1
blastp_uniprot_sprot sp|Q498H0|PD5BA_XENLA 71 236 + 166 Gaps:2 11.60 1448 22.62 6e-10 Sister chromatid cohesion protein PDS5 homolog B-A OS Xenopus laevis GN pds5b-a PE 1 SV 1
blastp_uniprot_sprot sp|Q4VA53|PDS5B_MOUSE 71 236 + 166 Gaps:2 11.62 1446 22.62 6e-10 Sister chromatid cohesion protein PDS5 homolog B OS Mus musculus GN Pds5b PE 1 SV 1
blastp_uniprot_sprot sp|Q29RF7|PDS5A_HUMAN 24 240 + 217 Gaps:11 16.90 1337 22.12 1e-09 Sister chromatid cohesion protein PDS5 homolog A OS Homo sapiens GN PDS5A PE 1 SV 1
blastp_uniprot_sprot sp|Q6A026|PDS5A_MOUSE 24 240 + 217 Gaps:11 16.97 1332 22.12 1e-09 Sister chromatid cohesion protein PDS5 homolog A OS Mus musculus GN Pds5a PE 3 SV 3
rpsblast_kog gnl|CDD|36738 18 238 + 221 Gaps:23 35.47 1266 31.18 1e-29 KOG1525 KOG1525 KOG1525 Sister chromatid cohesion complex Cohesin subunit PDS5 [Cell cycle control cell division chromosome partitioning].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 239 237 PTHR12663:SF3 none none none
PANTHER 3 239 237 PTHR12663 none none none
SUPERFAMILY 48 218 171 SSF48371 none none IPR016024

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting