Protein : Qrob_P0008600.2 Q. robur
Protein Identifier  ? Qrob_P0008600.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR13644 - ARKADIA-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 171  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252649 5 170 + 166 Gaps:8 95.35 172 47.56 3e-39 RING-H2 finger protein ATL47-like
blastp_kegg lcl|cam:101501965 30 170 + 141 Gaps:1 99.29 141 45.71 3e-38 RING-H2 finger protein ATL47-like
blastp_kegg lcl|cam:101501653 30 170 + 141 Gaps:1 99.29 141 45.71 7e-38 RING-H2 finger protein ATL47-like
blastp_kegg lcl|cam:101505331 42 170 + 129 Gaps:5 94.03 134 51.59 3e-37 RING-H2 finger protein ATL54-like
blastp_kegg lcl|mtr:MTR_5g038940 34 170 + 137 Gaps:1 88.89 153 45.59 1e-36 E3 ubiquitin-protein ligase
blastp_kegg lcl|pvu:PHAVU_003G034000g 46 170 + 125 Gaps:2 75.00 164 49.59 2e-36 hypothetical protein
blastp_kegg lcl|mtr:MTR_5g038960 40 170 + 131 Gaps:1 94.89 137 46.92 6e-36 E3 ubiquitin-protein ligase
blastp_kegg lcl|tcc:TCM_010466 1 170 + 170 Gaps:8 100.00 172 44.77 2e-35 RING/U-box superfamily protein putative
blastp_kegg lcl|mtr:MTR_5g038950 40 170 + 131 Gaps:1 96.30 135 46.15 2e-35 RING finger protein
blastp_kegg lcl|cam:101502296 43 170 + 128 Gaps:5 93.28 134 49.60 9e-35 RING-H2 finger protein ATL54-like
blastp_pdb 1iym_A 89 137 + 49 Gaps:2 89.09 55 57.14 4e-11 mol:protein length:55 EL5
blastp_pdb 1x4j_A 78 138 + 61 Gaps:1 80.00 75 40.00 2e-08 mol:protein length:75 RING finger protein 38
blastp_pdb 2kiz_A 90 133 + 44 Gaps:1 62.32 69 48.84 9e-08 mol:protein length:69 E3 ubiquitin-protein ligase Arkadia
blastp_pdb 2ect_A 89 143 + 55 Gaps:1 69.23 78 40.74 1e-06 mol:protein length:78 RING finger protein 126
blastp_uniprot_sprot sp|Q9ZT50|RHA2A_ARATH 70 144 + 75 Gaps:3 50.32 155 39.74 1e-12 E3 ubiquitin-protein ligase RHA2A OS Arabidopsis thaliana GN RHA2A PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZU51|RHA2B_ARATH 70 138 + 69 Gaps:1 47.62 147 38.57 3e-12 Probable E3 ubiquitin-protein ligase RHA2B OS Arabidopsis thaliana GN RHA2B PE 1 SV 2
blastp_uniprot_sprot sp|P0C035|ATL60_ARATH 60 163 + 104 Gaps:12 34.19 310 40.57 5e-11 RING-H2 finger protein ATL60 OS Arabidopsis thaliana GN ATL60 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZJ6|ATL5_ARATH 68 144 + 77 Gaps:2 29.96 257 41.56 3e-10 RING-H2 finger protein ATL5 OS Arabidopsis thaliana GN ATL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUS4|RHA1A_ARATH 28 144 + 117 Gaps:18 83.65 159 29.32 3e-10 RING-H2 zinc finger protein RHA1a OS Arabidopsis thaliana GN RHA1A PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLC3|ATL41_ARATH 38 139 + 102 Gaps:17 49.58 236 35.04 5e-10 E3 ubiquitin-protein ligase ATL41 OS Arabidopsis thaliana GN ATL41 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GW38|ATL47_ARATH 84 136 + 53 Gaps:2 14.36 369 50.94 6e-10 RING-H2 finger protein ATL47 OS Arabidopsis thaliana GN ATL47 PE 2 SV 1
blastp_uniprot_sprot sp|E9QAU8|RN165_MOUSE 21 148 + 128 Gaps:15 32.56 347 33.63 8e-10 RING finger protein 165 OS Mus musculus GN Rnf165 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZSG1|RN165_HUMAN 21 148 + 128 Gaps:15 32.66 346 33.63 9e-10 RING finger protein 165 OS Homo sapiens GN RNF165 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LRB7|EL5_ORYSJ 89 133 + 45 Gaps:2 13.85 325 60.00 9e-10 E3 ubiquitin-protein ligase EL5 OS Oryza sativa subsp. japonica GN EL5.1 PE 1 SV 1
rpsblast_cdd gnl|CDD|35099 89 138 + 50 none 13.37 374 36.00 9e-09 COG5540 COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|205816 90 135 + 46 Gaps:1 97.83 46 51.11 3e-08 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_kog gnl|CDD|39828 78 149 + 72 Gaps:5 19.25 348 37.31 3e-10 KOG4628 KOG4628 KOG4628 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 6 23 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 35 56 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 57 170 114 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 90 133 44 PF13639 none Ring finger domain IPR001841
SUPERFAMILY 85 139 55 SSF57850 none none none
SMART 91 132 42 SM00184 none Ring finger IPR001841
ProSiteProfiles 91 133 43 PS50089 none Zinc finger RING-type profile. IPR001841
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 87 136 50 G3DSA:3.30.40.10 none none IPR013083
PANTHER 85 162 78 PTHR13644 none none none
Phobius 24 34 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

2 Localization

Analysis Start End Length
TMHMM 34 56 22
TMHMM 7 24 17

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 2 0.925 0.130 NON-PLANT 21