Protein : Qrob_P0008590.2 Q. robur
Protein Identifier  ? Qrob_P0008590.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR13644 - ARKADIA-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 171  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252649 5 170 + 166 Gaps:8 95.35 172 48.17 2e-40 RING-H2 finger protein ATL47-like
blastp_kegg lcl|cam:101505331 42 170 + 129 Gaps:5 94.03 134 51.59 4e-37 RING-H2 finger protein ATL54-like
blastp_kegg lcl|cam:101501965 30 170 + 141 Gaps:1 99.29 141 45.00 6e-37 RING-H2 finger protein ATL47-like
blastp_kegg lcl|cam:101501653 30 170 + 141 Gaps:1 99.29 141 45.00 2e-36 RING-H2 finger protein ATL47-like
blastp_kegg lcl|mtr:MTR_5g038940 34 170 + 137 Gaps:1 88.89 153 45.59 3e-36 E3 ubiquitin-protein ligase
blastp_kegg lcl|mtr:MTR_5g038960 40 170 + 131 Gaps:1 94.89 137 46.92 1e-35 E3 ubiquitin-protein ligase
blastp_kegg lcl|pvu:PHAVU_003G034000g 46 170 + 125 Gaps:2 75.00 164 49.59 2e-35 hypothetical protein
blastp_kegg lcl|mtr:MTR_5g038950 40 170 + 131 Gaps:1 96.30 135 46.15 5e-35 RING finger protein
blastp_kegg lcl|tcc:TCM_010466 1 170 + 170 Gaps:8 100.00 172 44.19 1e-34 RING/U-box superfamily protein putative
blastp_kegg lcl|mtr:MTR_5g066690 42 170 + 129 Gaps:5 94.89 137 50.00 2e-34 E3 ubiquitin-protein ligase
blastp_pdb 1iym_A 89 137 + 49 Gaps:2 89.09 55 57.14 5e-11 mol:protein length:55 EL5
blastp_pdb 1x4j_A 78 138 + 61 Gaps:1 80.00 75 40.00 3e-08 mol:protein length:75 RING finger protein 38
blastp_pdb 2kiz_A 90 133 + 44 Gaps:1 62.32 69 48.84 1e-07 mol:protein length:69 E3 ubiquitin-protein ligase Arkadia
blastp_pdb 2ect_A 89 143 + 55 Gaps:1 69.23 78 40.74 6e-07 mol:protein length:78 RING finger protein 126
blastp_uniprot_sprot sp|Q9ZT50|RHA2A_ARATH 70 144 + 75 Gaps:3 50.32 155 39.74 9e-13 E3 ubiquitin-protein ligase RHA2A OS Arabidopsis thaliana GN RHA2A PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZU51|RHA2B_ARATH 70 138 + 69 Gaps:1 47.62 147 38.57 1e-12 Probable E3 ubiquitin-protein ligase RHA2B OS Arabidopsis thaliana GN RHA2B PE 1 SV 2
blastp_uniprot_sprot sp|Q9SUS5|RHA1B_ARATH 25 143 + 119 Gaps:18 85.99 157 31.11 3e-10 E3 ubiquitin-protein ligase RHA1B OS Arabidopsis thaliana GN RHA1B PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZJ6|ATL5_ARATH 68 144 + 77 Gaps:2 29.96 257 41.56 5e-10 RING-H2 finger protein ATL5 OS Arabidopsis thaliana GN ATL5 PE 2 SV 1
blastp_uniprot_sprot sp|P0C035|ATL60_ARATH 60 163 + 104 Gaps:6 34.19 310 37.74 8e-10 RING-H2 finger protein ATL60 OS Arabidopsis thaliana GN ATL60 PE 2 SV 1
blastp_uniprot_sprot sp|E9QAU8|RN165_MOUSE 58 148 + 91 Gaps:10 23.34 347 39.51 8e-10 RING finger protein 165 OS Mus musculus GN Rnf165 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LRB7|EL5_ORYSJ 89 133 + 45 Gaps:2 13.85 325 60.00 1e-09 E3 ubiquitin-protein ligase EL5 OS Oryza sativa subsp. japonica GN EL5.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ZSG1|RN165_HUMAN 58 148 + 91 Gaps:10 23.41 346 38.27 1e-09 RING finger protein 165 OS Homo sapiens GN RNF165 PE 1 SV 1
blastp_uniprot_sprot sp|Q5M974|RN181_XENTR 89 136 + 48 Gaps:1 30.13 156 55.32 2e-09 E3 ubiquitin-protein ligase RNF181 OS Xenopus tropicalis GN rnf181 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLC3|ATL41_ARATH 38 139 + 102 Gaps:19 49.58 236 34.19 2e-09 E3 ubiquitin-protein ligase ATL41 OS Arabidopsis thaliana GN ATL41 PE 1 SV 1
rpsblast_cdd gnl|CDD|35099 89 138 + 50 none 13.37 374 36.00 8e-09 COG5540 COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|205816 90 133 + 44 Gaps:1 93.48 46 53.49 4e-08 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_kog gnl|CDD|39828 78 149 + 72 Gaps:5 19.25 348 37.31 2e-10 KOG4628 KOG4628 KOG4628 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 24 34 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 57 170 114 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 6 23 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 35 56 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 90 133 44 PF13639 none Ring finger domain IPR001841
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 87 136 50 G3DSA:3.30.40.10 none none IPR013083
SUPERFAMILY 90 139 50 SSF57850 none none none
SMART 91 132 42 SM00184 none Ring finger IPR001841
ProSiteProfiles 91 133 43 PS50089 none Zinc finger RING-type profile. IPR001841
PANTHER 85 162 78 PTHR13644 none none none

2 Localization

Analysis Start End Length
TMHMM 34 56 22
TMHMM 7 24 17

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.927 0.118 NON-PLANT 21