Protein : Qrob_P0008560.2 Q. robur
Protein Identifier  ? Qrob_P0008560.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR22764//PTHR22764:SF56 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 172  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s14370g 35 171 + 137 Gaps:18 95.49 133 53.54 4e-32 POPTRDRAFT_566711 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s14330g 35 171 + 137 Gaps:18 95.49 133 52.76 5e-32 POPTRDRAFT_566707 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s14320g 35 171 + 137 Gaps:18 95.49 133 52.76 5e-32 hypothetical protein
blastp_kegg lcl|cam:101501653 35 171 + 137 Gaps:10 91.49 141 50.39 5e-31 RING-H2 finger protein ATL47-like
blastp_kegg lcl|tcc:TCM_032568 37 171 + 135 Gaps:13 66.67 186 48.39 2e-30 RING/U-box superfamily protein putative
blastp_kegg lcl|vvi:100252649 1 171 + 171 Gaps:15 100.00 172 41.28 6e-30 RING-H2 finger protein ATL47-like
blastp_kegg lcl|cam:101501965 35 171 + 137 Gaps:10 91.49 141 48.84 7e-30 RING-H2 finger protein ATL47-like
blastp_kegg lcl|mdm:103402752 36 171 + 136 Gaps:8 96.00 150 43.75 2e-29 RING-H2 finger protein ATL11-like
blastp_kegg lcl|mtr:MTR_5g038940 1 171 + 171 Gaps:20 100.00 153 43.14 2e-28 E3 ubiquitin-protein ligase
blastp_kegg lcl|mtr:MTR_5g038950 35 171 + 137 Gaps:10 95.56 135 47.29 5e-28 RING finger protein
blastp_pdb 1iym_A 86 133 + 48 Gaps:2 87.27 55 60.42 2e-10 mol:protein length:55 EL5
blastp_pdb 2ect_A 81 143 + 63 Gaps:5 84.62 78 45.45 4e-09 mol:protein length:78 RING finger protein 126
blastp_pdb 2kiz_A 90 133 + 44 Gaps:1 62.32 69 48.84 4e-08 mol:protein length:69 E3 ubiquitin-protein ligase Arkadia
blastp_pdb 1x4j_A 85 138 + 54 Gaps:1 70.67 75 39.62 2e-07 mol:protein length:75 RING finger protein 38
blastp_uniprot_sprot sp|Q9ZU51|RHA2B_ARATH 35 162 + 128 Gaps:3 85.03 147 35.20 1e-15 Probable E3 ubiquitin-protein ligase RHA2B OS Arabidopsis thaliana GN RHA2B PE 1 SV 2
blastp_uniprot_sprot sp|Q8W571|ATL32_ARATH 69 156 + 88 Gaps:2 27.24 323 35.23 5e-11 RING-H2 finger protein ATL32 OS Arabidopsis thaliana GN ATL32 PE 2 SV 3
blastp_uniprot_sprot sp|Q9SUS4|RHA1A_ARATH 1 139 + 139 Gaps:17 85.53 159 33.09 3e-10 RING-H2 zinc finger protein RHA1a OS Arabidopsis thaliana GN RHA1A PE 2 SV 1
blastp_uniprot_sprot sp|Q5NCP0|RNF43_MOUSE 81 132 + 52 Gaps:2 6.38 784 52.00 4e-10 E3 ubiquitin-protein ligase RNF43 OS Mus musculus GN Rnf43 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LRB7|EL5_ORYSJ 89 133 + 45 Gaps:2 13.85 325 64.44 8e-10 E3 ubiquitin-protein ligase EL5 OS Oryza sativa subsp. japonica GN EL5.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q93Z92|RING4_ARATH 83 150 + 68 Gaps:7 15.64 390 49.18 9e-10 E3 ubiquitin-protein ligase At4g11680 OS Arabidopsis thaliana GN At4g11680 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZT50|RHA2A_ARATH 67 137 + 71 none 45.81 155 36.62 9e-10 E3 ubiquitin-protein ligase RHA2A OS Arabidopsis thaliana GN RHA2A PE 1 SV 1
blastp_uniprot_sprot sp|Q9P7E1|YOF7_SCHPO 91 133 + 43 Gaps:1 7.55 583 52.27 2e-09 Uncharacterized RING finger protein P4H10.07 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBP4H10.07 PE 1 SV 1
blastp_uniprot_sprot sp|Q68DV7|RNF43_HUMAN 81 132 + 52 Gaps:2 6.39 783 50.00 3e-09 E3 ubiquitin-protein ligase RNF43 OS Homo sapiens GN RNF43 PE 1 SV 1
blastp_uniprot_sprot sp|O22755|ATL44_ARATH 10 138 + 129 Gaps:9 69.19 185 31.25 4e-09 RING-H2 finger protein ATL44 OS Arabidopsis thaliana GN ATL44 PE 2 SV 1
rpsblast_cdd gnl|CDD|35099 89 138 + 50 Gaps:2 13.37 374 42.00 1e-10 COG5540 COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|205816 90 135 + 46 Gaps:1 97.83 46 51.11 6e-08 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_kog gnl|CDD|39828 10 133 + 124 Gaps:3 34.77 348 19.01 1e-11 KOG4628 KOG4628 KOG4628 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 86 136 51 G3DSA:3.30.40.10 none none IPR013083
SMART 91 132 42 SM00184 none Ring finger IPR001841
SUPERFAMILY 84 144 61 SSF57850 none none none
Phobius 6 25 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 91 133 43 PS50089 none Zinc finger RING-type profile. IPR001841
PANTHER 67 138 72 PTHR22764:SF56 none none none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 90 133 44 PF13639 none Ring finger domain IPR001841
PANTHER 67 138 72 PTHR22764 none none none
SMART 90 133 44 SM00744 "UniPathway:UPA00143" The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. IPR011016
Phobius 26 171 146 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 4 26 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.990 0.018 NON-PLANT 25