4 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0020037 | heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
GO:0055114 | oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
GO:0004601 | peroxidase activity | Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. |
GO:0006979 | response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. |
36 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|pop:POPTR_0003s21640g | 16 | 349 | + | 334 | Gaps:3 | 95.20 | 354 | 73.59 | 4e-178 | hypothetical protein |
blastp_kegg | lcl|pop:POPTR_0003s21620g | 16 | 349 | + | 334 | Gaps:6 | 97.42 | 349 | 72.65 | 3e-171 | POPTRDRAFT_817692 peroxidase family protein |
blastp_kegg | lcl|pxb:103964015 | 7 | 345 | + | 339 | Gaps:5 | 98.29 | 350 | 70.35 | 2e-167 | peroxidase A2-like |
blastp_kegg | lcl|pmum:103327462 | 2 | 345 | + | 344 | Gaps:8 | 96.44 | 365 | 67.90 | 9e-162 | peroxidase A2-like |
blastp_kegg | lcl|pxb:103963973 | 17 | 336 | + | 320 | Gaps:4 | 92.57 | 350 | 71.30 | 3e-161 | peroxidase A2-like |
blastp_kegg | lcl|pop:POPTR_0001s05050g | 16 | 349 | + | 334 | Gaps:3 | 98.25 | 343 | 68.25 | 2e-160 | POPTRDRAFT_547681 hypothetical protein |
blastp_kegg | lcl|pper:PRUPE_ppa007826mg | 15 | 339 | + | 325 | none | 91.81 | 354 | 69.23 | 4e-159 | hypothetical protein |
blastp_kegg | lcl|vvi:100260291 | 14 | 349 | + | 336 | Gaps:4 | 99.13 | 343 | 67.65 | 5e-159 | peroxidase 15-like |
blastp_kegg | lcl|mdm:103452455 | 40 | 336 | + | 297 | Gaps:4 | 95.56 | 315 | 75.08 | 1e-158 | peroxidase A2-like |
blastp_kegg | lcl|pop:POPTR_0003s21610g | 16 | 349 | + | 334 | Gaps:3 | 98.25 | 343 | 67.06 | 3e-157 | POPTRDRAFT_555257 hypothetical protein |
blastp_pdb | 1qo4_A | 34 | 338 | + | 305 | none | 99.67 | 306 | 70.16 | 7e-155 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 1pa2_A | 34 | 338 | + | 305 | none | 99.67 | 306 | 70.16 | 7e-155 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 1fhf_C | 34 | 336 | + | 303 | none | 99.67 | 304 | 66.67 | 3e-132 | mol:protein length:304 SEED COAT PEROXIDASE |
blastp_pdb | 1fhf_B | 34 | 336 | + | 303 | none | 99.67 | 304 | 66.67 | 3e-132 | mol:protein length:304 SEED COAT PEROXIDASE |
blastp_pdb | 1fhf_A | 34 | 336 | + | 303 | none | 99.67 | 304 | 66.67 | 3e-132 | mol:protein length:304 SEED COAT PEROXIDASE |
blastp_pdb | 1gwu_A | 34 | 339 | + | 306 | Gaps:2 | 99.68 | 309 | 58.77 | 2e-128 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 1gx2_B | 34 | 339 | + | 306 | Gaps:2 | 99.68 | 309 | 58.44 | 3e-128 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 1gx2_A | 34 | 339 | + | 306 | Gaps:2 | 99.68 | 309 | 58.44 | 3e-128 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 3atj_B | 34 | 339 | + | 306 | Gaps:2 | 99.68 | 309 | 58.44 | 5e-128 | mol:protein length:309 PROTEIN (HORSERADISH PEROXIDASE C1A) |
blastp_pdb | 3atj_A | 34 | 339 | + | 306 | Gaps:2 | 99.68 | 309 | 58.44 | 5e-128 | mol:protein length:309 PROTEIN (HORSERADISH PEROXIDASE C1A) |
blastp_uniprot_sprot | sp|Q9LEH3|PER15_IPOBA | 17 | 336 | + | 320 | Gaps:1 | 98.17 | 327 | 69.78 | 2e-155 | Peroxidase 15 OS Ipomoea batatas GN pod PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q9FG34|PER54_ARATH | 8 | 336 | + | 329 | Gaps:2 | 92.46 | 358 | 67.07 | 7e-155 | Peroxidase 54 OS Arabidopsis thaliana GN PER54 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q42578|PER53_ARATH | 16 | 338 | + | 323 | none | 96.42 | 335 | 67.49 | 7e-155 | Peroxidase 53 OS Arabidopsis thaliana GN PER53 PE 1 SV 1 |
blastp_uniprot_sprot | sp|P80679|PERA2_ARMRU | 34 | 338 | + | 305 | none | 100.00 | 305 | 67.54 | 1e-147 | Peroxidase A2 OS Armoracia rusticana GN HRPA2 PE 1 SV 1 |
blastp_uniprot_sprot | sp|P11965|PERX_TOBAC | 20 | 336 | + | 317 | Gaps:5 | 96.91 | 324 | 61.78 | 6e-135 | Lignin-forming anionic peroxidase OS Nicotiana tabacum PE 2 SV 1 |
blastp_uniprot_sprot | sp|P00433|PER1A_ARMRU | 6 | 339 | + | 334 | Gaps:3 | 94.90 | 353 | 57.61 | 2e-133 | Peroxidase C1A OS Armoracia rusticana GN PRXC1A PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q9LHB9|PER32_ARATH | 7 | 339 | + | 333 | Gaps:3 | 94.89 | 352 | 57.49 | 1e-131 | Peroxidase 32 OS Arabidopsis thaliana GN PER32 PE 1 SV 3 |
blastp_uniprot_sprot | sp|P15233|PER1C_ARMRU | 25 | 339 | + | 315 | Gaps:2 | 95.48 | 332 | 58.68 | 6e-130 | Peroxidase C1C (Fragment) OS Armoracia rusticana GN PRXC1C PE 3 SV 1 |
blastp_uniprot_sprot | sp|P15232|PER1B_ARMRU | 7 | 339 | + | 333 | Gaps:3 | 95.16 | 351 | 57.78 | 2e-129 | Peroxidase C1B OS Armoracia rusticana GN PRXC1B PE 3 SV 1 |
blastp_uniprot_sprot | sp|P17180|PER3_ARMRU | 12 | 336 | + | 325 | Gaps:1 | 93.41 | 349 | 57.06 | 3e-129 | Peroxidase C3 OS Armoracia rusticana GN PRXC3 PE 3 SV 1 |
28 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
PANTHER | 16 | 339 | 324 | PTHR31388 | none | none | none |
Phobius | 1 | 12 | 12 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
Gene3D | 40 | 186 | 147 | G3DSA:1.10.520.10 | none | none | none |
PRINTS | 254 | 269 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 128 | 145 | 18 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 194 | 209 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 146 | 158 | 13 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 66 | 80 | 15 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
ProSitePatterns | 194 | 204 | 11 | PS00435 | none | Peroxidases proximal heme-ligand signature. | IPR019793 |
Gene3D | 187 | 315 | 129 | G3DSA:1.10.420.10 | none | none | none |
Phobius | 27 | 33 | 7 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
ProSiteProfiles | 34 | 336 | 303 | PS50873 | none | Plant heme peroxidase family profile. | IPR002016 |
PANTHER | 16 | 339 | 324 | PTHR31388:SF7 | none | none | none |
PRINTS | 252 | 267 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 44 | 63 | 20 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 108 | 121 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 193 | 205 | 13 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 268 | 285 | 18 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 310 | 323 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 146 | 161 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 68 | 88 | 21 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 127 | 137 | 11 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
Phobius | 1 | 33 | 33 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
ProSitePatterns | 66 | 77 | 12 | PS00436 | none | Peroxidases active site signature. | IPR019794 |
SUPERFAMILY | 34 | 336 | 303 | SSF48113 | none | none | IPR010255 |
Pfam | 52 | 299 | 248 | PF00141 | none | Peroxidase | IPR002016 |
Phobius | 13 | 26 | 14 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
Phobius | 34 | 349 | 316 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
3 Localization
Analysis | Start | End | Length |
---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 40 | 39 |
TMHMM | 7 | 29 | 22 |
SignalP_EUK | 1 | 31 | 30 |
3 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |