Protein : Qrob_P0007900.2 Q. robur
Protein Identifier  ? Qrob_P0007900.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR16007:SF15 - TRANSMEMBRANE PROTEIN 45B (PTHR16007:SF15) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 314  
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0 Synonyms

0 GO Terms

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0003s21430g 1 313 + 313 none 100.00 313 68.69 3e-160 POPTRDRAFT_555238 hypothetical protein
blastp_kegg lcl|fve:101297521 1 313 + 313 Gaps:4 100.00 313 68.37 2e-154 uncharacterized protein LOC101297521
blastp_kegg lcl|mdm:103452447 1 313 + 313 Gaps:3 100.00 316 72.15 4e-153 transmembrane epididymal protein 1
blastp_kegg lcl|pxb:103964196 1 313 + 313 Gaps:3 100.00 316 71.84 6e-153 transmembrane protein 45A
blastp_kegg lcl|pper:PRUPE_ppa008861mg 1 313 + 313 Gaps:3 100.00 316 70.57 8e-153 hypothetical protein
blastp_kegg lcl|pmum:103325329 1 313 + 313 Gaps:3 100.00 316 69.94 7e-152 uncharacterized LOC103325329
blastp_kegg lcl|vvi:100244332 1 313 + 313 Gaps:7 100.00 306 68.30 1e-150 uncharacterized LOC100244332
blastp_kegg lcl|pxb:103954021 1 313 + 313 Gaps:3 100.00 316 71.20 2e-150 transmembrane protein 45A-like
blastp_kegg lcl|tcc:TCM_040256 1 313 + 313 Gaps:2 100.00 315 65.71 5e-150 Family of Uncharacterized protein function (DUF716)
blastp_kegg lcl|sly:101248128 1 313 + 313 Gaps:3 100.00 316 65.82 8e-150 uncharacterized LOC101248128
rpsblast_cdd gnl|CDD|113585 119 257 + 139 Gaps:4 98.54 137 45.19 9e-39 pfam04819 DUF716 Family of unknown function (DUF716). This family is equally distributed in both metazoa and plants. Annotation associated with a member from Nicotiana tabacum suggest that it may be involved in response to viral attack in plants. However no clear function has been assigned to this family.

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 281 281 PTHR16007 none none IPR006904
Phobius 183 202 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 172 182 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 259 313 55 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 281 281 PTHR16007:SF15 none none none
Phobius 140 150 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 240 258 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 119 257 139 PF04819 none Family of unknown function (DUF716) IPR006904
Phobius 110 120 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 121 139 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 90 109 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 49 70 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 151 171 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 71 89 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 203 239 37 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 24 48 25 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 6 23 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

7 Localization

Analysis Start End Length
TMHMM 117 136 19
TMHMM 49 71 22
TMHMM 91 110 19
TMHMM 4 23 19
TMHMM 180 202 22
TMHMM 236 258 22
TMHMM 151 173 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Secretory pathway 3 0.626 0.208 NON-PLANT 30