Protein : Qrob_P0007890.2 Q. robur
Protein Identifier  ? Qrob_P0007890.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=1) PTHR11078 - N UTILIZATION SUBSTANCE PROTEIN B-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 310  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006353 DNA-templated transcription, termination The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265613 19 301 + 283 Gaps:37 92.36 288 73.31 4e-124 uncharacterized LOC100265613
blastp_kegg lcl|pop:POPTR_0003s20820g 1 308 + 308 Gaps:24 99.35 308 64.05 1e-122 POPTRDRAFT_712227 hypothetical protein
blastp_kegg lcl|fve:101311171 55 308 + 254 Gaps:31 82.82 291 78.01 4e-121 uncharacterized protein LOC101311171
blastp_kegg lcl|pmum:103321114 48 308 + 261 Gaps:34 81.91 304 77.51 1e-120 uncharacterized LOC103321114
blastp_kegg lcl|pper:PRUPE_ppa009156mg 48 308 + 261 Gaps:34 81.91 304 77.51 1e-120 hypothetical protein
blastp_kegg lcl|cit:102627108 18 308 + 291 Gaps:30 94.37 302 64.91 7e-116 hypothetical protein
blastp_kegg lcl|tcc:TCM_038626 97 301 + 205 Gaps:12 72.76 290 77.73 9e-116 Antitermination NusB domain-containing protein isoform 1
blastp_kegg lcl|cic:CICLE_v10015880mg 18 308 + 291 Gaps:30 85.59 333 64.91 1e-115 hypothetical protein
blastp_kegg lcl|pxb:103931446 52 308 + 257 Gaps:20 86.62 299 70.27 4e-115 uncharacterized LOC103931446
blastp_kegg lcl|mdm:103446965 52 308 + 257 Gaps:20 86.62 299 70.27 4e-115 uncharacterized LOC103446965
blastp_uniprot_sprot sp|Q18B61|NUSB_CLOD6 200 293 + 94 Gaps:5 52.66 169 37.08 4e-07 N utilization substance protein B homolog OS Clostridium difficile (strain 630) GN nusB PE 3 SV 1
blastp_uniprot_sprot sp|Q5N1J7|NUSB_SYNP6 240 289 + 50 none 23.47 213 52.00 8e-07 N utilization substance protein B homolog OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN nusB PE 3 SV 1
blastp_uniprot_sprot sp|Q8GIR7|NUSB_SYNE7 240 289 + 50 none 23.47 213 52.00 8e-07 N utilization substance protein B homolog OS Synechococcus elongatus (strain PCC 7942) GN nusB PE 3 SV 1
blastp_uniprot_sprot sp|B8HYJ8|NUSB_CYAP4 193 295 + 103 Gaps:7 48.80 209 32.35 3e-06 N utilization substance protein B homolog OS Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN nusB PE 3 SV 1
blastp_uniprot_sprot sp|A7GWZ7|NUSB_CAMC5 239 286 + 48 none 36.64 131 45.83 5e-06 N utilization substance protein B homolog OS Campylobacter curvus (strain 525.92) GN nusB PE 3 SV 1
rpsblast_cdd gnl|CDD|29565 175 293 + 119 Gaps:16 96.15 130 32.00 1e-15 cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda which use the system to switch between the lysogenic and lytic modes of phage propagation..
rpsblast_cdd gnl|CDD|211704 113 292 + 180 Gaps:54 99.22 129 36.72 2e-09 TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is in fact ribosomal protein S10.
rpsblast_cdd gnl|CDD|29564 200 292 + 93 Gaps:7 69.77 129 27.78 3e-09 cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the N-terminal non-catalytic RNA-binding domain with NusB..
rpsblast_cdd gnl|CDD|182007 244 290 + 47 none 22.71 207 51.06 4e-08 PRK09634 nusB transcription antitermination protein NusB Provisional.
rpsblast_cdd gnl|CDD|201560 176 291 + 116 Gaps:10 88.89 126 25.89 3e-07 pfam01029 NusB NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 201 294 94 G3DSA:1.10.940.10 none none IPR006027
Gene3D 109 152 44 G3DSA:1.10.940.10 none none IPR006027
PANTHER 91 308 218 PTHR11078 none none IPR011605
SUPERFAMILY 110 145 36 SSF48013 none none IPR006027
SUPERFAMILY 194 294 101 SSF48013 none none IPR006027
Pfam 175 291 117 PF01029 none NusB family IPR006027
Coils 73 94 22 Coil none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting