Protein : Qrob_P0007370.2 Q. robur
Protein Identifier  ? Qrob_P0007370.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=9) K15015 - solute carrier family 32 (vesicular inhibitory amino acid transporter) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 426  
Kegg Orthology  K15015
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0 Synonyms

0 GO Terms

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_018560 16 425 + 410 Gaps:4 89.22 464 74.88 0.0 Amino acid transporter isoform 1
blastp_kegg lcl|mdm:103442353 12 425 + 414 Gaps:1 95.62 434 74.46 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|pxb:103964983 12 425 + 414 Gaps:1 95.62 434 73.73 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|pper:PRUPE_ppa006034mg 2 425 + 424 Gaps:1 98.61 431 72.71 0.0 hypothetical protein
blastp_kegg lcl|vvi:100255991 8 425 + 418 Gaps:3 96.96 428 72.53 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|mdm:103416993 22 425 + 404 none 86.51 467 75.00 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|pmum:103330008 2 425 + 424 Gaps:1 98.61 431 72.47 0.0 vacuolar amino acid transporter 1
blastp_kegg lcl|pxb:103951063 22 425 + 404 none 93.09 434 75.25 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|pxb:103951062 22 424 + 403 none 92.86 434 76.18 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|pxb:103933083 11 425 + 415 none 95.62 434 73.25 0.0 vacuolar amino acid transporter 1-like
blastp_uniprot_sprot sp|P47082|AVT1_YEAST 41 411 + 371 Gaps:34 64.62 602 30.08 3e-38 Vacuolar amino acid transporter 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN AVT1 PE 1 SV 1
blastp_uniprot_sprot sp|P34579|UNC47_CAEEL 7 423 + 417 Gaps:32 86.63 486 26.60 8e-26 Vesicular GABA transporter OS Caenorhabditis elegans GN unc-47 PE 1 SV 2
blastp_uniprot_sprot sp|Q6PF45|VIAAT_XENLA 11 425 + 415 Gaps:45 82.24 518 25.12 2e-23 Vesicular inhibitory amino acid transporter OS Xenopus laevis GN slc32a1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DIV6|VIAAT_XENTR 15 425 + 411 Gaps:49 81.85 518 24.76 7e-20 Vesicular inhibitory amino acid transporter OS Xenopus tropicalis GN slc32a1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9H598|VIAAT_HUMAN 33 380 + 348 Gaps:38 69.33 525 25.00 2e-17 Vesicular inhibitory amino acid transporter OS Homo sapiens GN SLC32A1 PE 1 SV 2
blastp_uniprot_sprot sp|O35458|VIAAT_RAT 33 380 + 348 Gaps:38 69.33 525 25.00 3e-17 Vesicular inhibitory amino acid transporter OS Rattus norvegicus GN Slc32a1 PE 1 SV 1
blastp_uniprot_sprot sp|Q95KE2|VIAAT_MACFA 33 380 + 348 Gaps:38 69.33 525 25.00 3e-17 Vesicular inhibitory amino acid transporter OS Macaca fascicularis GN SLC32A1 PE 2 SV 1
blastp_uniprot_sprot sp|O35633|VIAAT_MOUSE 33 380 + 348 Gaps:38 69.33 525 24.73 6e-17 Vesicular inhibitory amino acid transporter OS Mus musculus GN Slc32a1 PE 1 SV 3
blastp_uniprot_sprot sp|Q4KL91|S36A4_XENLA 2 423 + 422 Gaps:45 85.63 522 25.06 2e-15 Proton-coupled amino acid transporter 4 OS Xenopus laevis GN slc36a4 PE 2 SV 1
blastp_uniprot_sprot sp|O22719|LHTL3_ARATH 39 411 + 373 Gaps:45 86.47 451 26.92 3e-15 Lysine histidine transporter-like 3 OS Arabidopsis thaliana GN At1g61270 PE 3 SV 2
rpsblast_cdd gnl|CDD|190008 44 419 + 376 Gaps:33 97.78 406 26.70 4e-44 pfam01490 Aa_trans Transmembrane amino acid transporter protein. This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases.
rpsblast_cdd gnl|CDD|31156 52 418 + 367 Gaps:28 93.73 415 18.77 1e-18 COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|140233 42 414 + 373 Gaps:22 84.15 467 21.63 4e-07 PTZ00206 PTZ00206 amino acid transporter Provisional.
rpsblast_kog gnl|CDD|36517 39 415 + 377 Gaps:22 89.93 437 33.59 9e-71 KOG1303 KOG1303 KOG1303 Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|39504 15 422 + 408 Gaps:31 80.34 524 25.42 8e-35 KOG4303 KOG4303 KOG4303 Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36518 7 421 + 415 Gaps:30 96.44 449 22.86 2e-30 KOG1304 KOG1304 KOG1304 Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|36519 39 424 + 386 Gaps:31 97.57 411 25.44 8e-25 KOG1305 KOG1305 KOG1305 Amino acid transporter protein [Amino acid transport and metabolism].

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 180 201 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 397 418 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 107 133 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 221 243 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 335 358 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 359 363 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 134 152 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 280 298 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 324 334 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 419 425 7 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 23 425 403 PTHR22950 none none none
Phobius 153 173 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 23 425 403 PTHR22950:SF191 none none none
Pfam 40 417 378 PF01490 none Transmembrane amino acid transporter protein IPR013057
Phobius 66 86 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 386 396 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 255 279 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 174 179 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 202 220 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 87 106 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 244 254 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 364 385 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 299 323 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 65 65 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

10 Localization

Analysis Start End Length
TMHMM 396 418 22
TMHMM 252 274 22
TMHMM 361 383 22
TMHMM 217 239 22
TMHMM 151 173 22
TMHMM 335 357 22
TMHMM 180 202 22
TMHMM 300 322 22
TMHMM 65 87 22
TMHMM 114 136 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting