Protein : Qrob_P0007350.2 Q. robur
Protein Identifier  ? Qrob_P0007350.2 Organism . Name  Quercus robur
Score  55.0 Score Type  egn
Protein Description  (M=9) K15015 - solute carrier family 32 (vesicular inhibitory amino acid transporter) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 410  
Kegg Orthology  K15015
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0 Synonyms

0 GO Terms

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_018560 1 409 + 409 Gaps:57 100.00 464 60.56 0.0 Amino acid transporter isoform 1
blastp_kegg lcl|pper:PRUPE_ppa006034mg 12 409 + 398 Gaps:25 98.14 431 64.30 0.0 hypothetical protein
blastp_kegg lcl|vvi:100255991 1 409 + 409 Gaps:25 100.00 428 61.68 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|mdm:103442353 20 409 + 390 Gaps:25 95.62 434 64.34 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|pmum:103330008 12 409 + 398 Gaps:25 98.14 431 64.30 0.0 vacuolar amino acid transporter 1
blastp_kegg lcl|pper:PRUPE_ppa023445mg 12 409 + 398 Gaps:25 98.83 428 62.65 0.0 hypothetical protein
blastp_kegg lcl|vvi:100261080 1 409 + 409 Gaps:23 100.00 428 62.15 0.0 vacuolar amino acid transporter 1-like
blastp_kegg lcl|fve:101291549 1 409 + 409 Gaps:33 99.09 440 61.93 7e-180 vacuolar amino acid transporter 1-like
blastp_kegg lcl|pxb:103964983 20 409 + 390 Gaps:25 95.62 434 63.37 1e-178 vacuolar amino acid transporter 1-like
blastp_kegg lcl|vvi:100854125 1 409 + 409 Gaps:34 100.00 417 62.59 8e-178 vacuolar amino acid transporter 1-like
blastp_uniprot_sprot sp|P47082|AVT1_YEAST 40 404 + 365 Gaps:68 65.95 602 30.23 2e-29 Vacuolar amino acid transporter 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN AVT1 PE 1 SV 1
blastp_uniprot_sprot sp|P34579|UNC47_CAEEL 16 406 + 391 Gaps:54 84.98 486 24.46 2e-13 Vesicular GABA transporter OS Caenorhabditis elegans GN unc-47 PE 1 SV 2
blastp_uniprot_sprot sp|Q6DIV6|VIAAT_XENTR 49 402 + 354 Gaps:80 75.29 518 26.15 2e-13 Vesicular inhibitory amino acid transporter OS Xenopus tropicalis GN slc32a1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6PF45|VIAAT_XENLA 49 402 + 354 Gaps:76 75.29 518 25.64 5e-13 Vesicular inhibitory amino acid transporter OS Xenopus laevis GN slc32a1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKS8|LHT1_ARATH 19 407 + 389 Gaps:56 97.53 446 21.84 2e-12 Lysine histidine transporter 1 OS Arabidopsis thaliana GN LHT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q28HE5|S38A6_XENTR 23 393 + 371 Gaps:97 92.86 448 25.72 8e-11 Probable sodium-coupled neutral amino acid transporter 6 OS Xenopus tropicalis GN slc38a6 PE 2 SV 1
blastp_uniprot_sprot sp|O22719|LHTL3_ARATH 38 409 + 372 Gaps:66 90.91 451 21.95 1e-09 Lysine histidine transporter-like 3 OS Arabidopsis thaliana GN At1g61270 PE 3 SV 2
blastp_uniprot_sprot sp|Q95KE2|VIAAT_MACFA 49 364 + 316 Gaps:81 67.24 525 24.93 1e-09 Vesicular inhibitory amino acid transporter OS Macaca fascicularis GN SLC32A1 PE 2 SV 1
blastp_uniprot_sprot sp|O35458|VIAAT_RAT 49 364 + 316 Gaps:81 67.24 525 24.93 1e-09 Vesicular inhibitory amino acid transporter OS Rattus norvegicus GN Slc32a1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9H598|VIAAT_HUMAN 49 364 + 316 Gaps:81 67.24 525 25.50 1e-09 Vesicular inhibitory amino acid transporter OS Homo sapiens GN SLC32A1 PE 1 SV 2
rpsblast_cdd gnl|CDD|190008 40 399 + 360 Gaps:56 99.01 406 25.62 5e-35 pfam01490 Aa_trans Transmembrane amino acid transporter protein. This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases.
rpsblast_cdd gnl|CDD|31156 40 396 + 357 Gaps:55 96.39 415 17.50 5e-14 COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|36517 40 400 + 361 Gaps:43 91.08 437 31.41 8e-56 KOG1303 KOG1303 KOG1303 Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|36518 42 405 + 364 Gaps:51 89.76 449 22.58 4e-28 KOG1304 KOG1304 KOG1304 Amino acid transporters [Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|39504 31 406 + 376 Gaps:68 78.24 524 23.66 1e-25 KOG4303 KOG4303 KOG4303 Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36519 40 406 + 367 Gaps:50 98.05 411 26.55 3e-22 KOG1305 KOG1305 KOG1305 Amino acid transporter protein [Amino acid transport and metabolism].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 18 409 392 PTHR22950:SF191 none none none
Phobius 237 262 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 70 70 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 239 401 163 PF01490 none Transmembrane amino acid transporter protein IPR013057
Pfam 41 219 179 PF01490 none Transmembrane amino acid transporter protein IPR013057
Phobius 282 307 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 18 409 392 PTHR22950 none none none
Phobius 263 281 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 407 409 3 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 194 216 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 189 193 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 343 347 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 217 236 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 348 369 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 370 380 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 381 406 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 93 164 72 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 71 92 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 308 318 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 319 342 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 165 188 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

9 Localization

Analysis Start End Length
TMHMM 319 341 22
TMHMM 164 186 22
TMHMM 345 367 22
TMHMM 238 260 22
TMHMM 193 215 22
TMHMM 380 402 22
TMHMM 70 92 22
TMHMM 49 66 17
TMHMM 117 139 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting