Protein : Qrob_P0007340.2 Q. robur
Protein Identifier  ? Qrob_P0007340.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR24015:SF36 - OS01G0170800 PROTEIN (FRAGMENT) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 516  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa004522mg 1 514 + 514 Gaps:9 100.00 505 73.07 0.0 hypothetical protein
blastp_kegg lcl|mdm:103442355 1 514 + 514 Gaps:9 100.00 505 70.10 0.0 pentatricopeptide repeat-containing protein At2g36730
blastp_kegg lcl|mdm:103416994 1 514 + 514 Gaps:9 100.00 505 69.70 0.0 pentatricopeptide repeat-containing protein At2g36730-like
blastp_kegg lcl|pxb:103951064 1 514 + 514 Gaps:9 100.00 505 69.11 0.0 pentatricopeptide repeat-containing protein At2g36730-like
blastp_kegg lcl|pmum:103330010 25 514 + 490 Gaps:1 42.30 1156 71.57 0.0 ATP-dependent zinc metalloprotease FTSH 6 chloroplastic-like
blastp_kegg lcl|pxb:103964982 25 514 + 490 Gaps:1 42.12 1161 69.73 0.0 ATP-dependent zinc metalloprotease FTSH 6 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10011507mg 1 514 + 514 Gaps:2 100.00 514 64.98 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0340700 27 512 + 486 none 42.01 1157 70.58 0.0 Cell division protein ftsH putative (EC:3.6.4.3)
blastp_kegg lcl|gmx:100787179 25 513 + 489 Gaps:4 97.62 505 65.92 0.0 pentatricopeptide repeat-containing protein At2g36730-like
blastp_kegg lcl|pop:POPTR_0017s12020g 1 515 + 515 Gaps:10 100.00 505 66.53 0.0 POPTRDRAFT_577649 pentatricopeptide repeat-containing family protein
blastp_uniprot_sprot sp|Q9ZQA1|PP188_ARATH 21 503 + 483 Gaps:2 96.01 501 64.03 0.0 Pentatricopeptide repeat-containing protein At2g36730 OS Arabidopsis thaliana GN PCMP-E44 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LK93|PP145_ARATH 32 511 + 480 Gaps:6 78.94 603 36.97 6e-106 Pentatricopeptide repeat-containing protein At2g02980 OS Arabidopsis thaliana GN PCMP-H26 PE 2 SV 2
blastp_uniprot_sprot sp|A8MQA3|PP330_ARATH 30 506 + 477 Gaps:9 80.67 595 36.88 1e-104 Pentatricopeptide repeat-containing protein At4g21065 OS Arabidopsis thaliana GN PCMP-H28 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FJY7|PP449_ARATH 16 488 + 473 Gaps:36 80.81 620 35.33 1e-103 Pentatricopeptide repeat-containing protein At5g66520 OS Arabidopsis thaliana GN PCMP-H61 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SX45|PPR75_ARATH 33 515 + 483 Gaps:35 97.99 596 44.69 6e-102 Pentatricopeptide repeat-containing protein At1g50270 OS Arabidopsis thaliana GN PCMP-E42 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C6T2|PPR68_ARATH 22 510 + 489 Gaps:17 80.53 606 37.70 4e-99 Pentatricopeptide repeat-containing protein At1g31920 OS Arabidopsis thaliana GN PCMP-H11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SJG6|PP200_ARATH 38 512 + 475 Gaps:40 89.98 559 35.79 1e-98 Pentatricopeptide repeat-containing protein At2g42920 chloroplastic OS Arabidopsis thaliana GN PCMP-E75 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FMA1|PP433_ARATH 42 510 + 469 Gaps:42 94.15 530 36.67 3e-97 Pentatricopeptide repeat-containing protein At5g56310 OS Arabidopsis thaliana GN PCMP-E13 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FI80|PP425_ARATH 38 511 + 474 Gaps:109 81.58 646 41.18 5e-97 Pentatricopeptide repeat-containing protein At5g48910 OS Arabidopsis thaliana GN PCMP-H38 PE 2 SV 1
blastp_uniprot_sprot sp|Q3E6Q1|PPR32_ARATH 15 510 + 496 Gaps:34 86.65 809 47.65 9e-97 Pentatricopeptide repeat-containing protein At1g11290 OS Arabidopsis thaliana GN PCMP-H40 PE 2 SV 1
rpsblast_cdd gnl|CDD|178626 46 510 + 465 Gaps:67 82.96 857 49.37 1e-80 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|178630 81 510 + 430 Gaps:36 71.59 697 40.88 6e-78 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178757 65 410 + 346 Gaps:43 32.17 1060 34.02 3e-14 PLN03218 PLN03218 maturation of RBCL 1 Provisional.

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 330 360 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 294 329 36 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 24 513 490 PTHR24015 none none none
ProSiteProfiles 92 126 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 228 262 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 127 161 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 162 192 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 366 396 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 24 513 490 PTHR24015:SF36 none none none
TIGRFAM 297 330 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 332 365 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 195 229 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 165 190 26 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 96 127 32 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
Pfam 195 225 31 PF01535 none PPR repeat IPR002885
Pfam 167 190 24 PF01535 none PPR repeat IPR002885
Pfam 332 358 27 PF01535 none PPR repeat IPR002885
Pfam 297 322 26 PF01535 none PPR repeat IPR002885
Pfam 268 295 28 PF01535 none PPR repeat IPR002885
Pfam 369 393 25 PF01535 none PPR repeat IPR002885
ProSiteProfiles 263 293 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 435 469 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 96 139 44 PF13041 none PPR repeat family IPR002885
ProSiteProfiles 193 227 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting