Protein : Qrob_P0007320.2 Q. robur
Protein Identifier  ? Qrob_P0007320.2 Organism . Name  Quercus robur
Score  47.0 Score Type  egn
Protein Description  (M=3) K00703 - starch synthase [EC:2.4.1.21] Code Enzyme  EC:2.4.1.21
Gene Prediction Quality  validated Protein length 

Sequence

Length: 769  
Kegg Orthology  K00703
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0004373 glycogen (starch) synthase activity Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1).

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001734mg 1 768 + 768 Gaps:7 100.00 773 72.96 0.0 hypothetical protein
blastp_kegg lcl|pmum:103330012 1 768 + 768 Gaps:7 100.00 773 72.83 0.0 granule-bound starch synthase 2 chloroplastic/amyloplastic
blastp_kegg lcl|vvi:100261002 1 768 + 768 Gaps:32 100.00 772 73.58 0.0 granule-bound starch synthase 2 chloroplastic/amyloplastic-like
blastp_kegg lcl|tcc:TCM_018569 15 768 + 754 Gaps:10 99.20 754 73.26 0.0 Starch synthase 2
blastp_kegg lcl|pxb:103951060 1 768 + 768 Gaps:14 100.00 778 70.95 0.0 granule-bound starch synthase 2 chloroplastic/amyloplastic-like
blastp_kegg lcl|mdm:103404446 1 768 + 768 Gaps:14 100.00 778 70.18 0.0 granule-bound starch synthase 2 chloroplastic/amyloplastic
blastp_kegg lcl|mdm:103429037 1 768 + 768 Gaps:15 100.00 777 70.40 0.0 granule-bound starch synthase 2 chloroplastic/amyloplastic-like
blastp_kegg lcl|fve:101314586 1 768 + 768 Gaps:23 100.00 759 71.67 0.0 starch synthase 2 chloroplastic/amyloplastic-like
blastp_kegg lcl|pxb:103964984 1 768 + 768 Gaps:15 100.00 777 70.53 0.0 granule-bound starch synthase 2 chloroplastic/amyloplastic-like
blastp_kegg lcl|cic:CICLE_v10011124mg 1 768 + 768 Gaps:5 100.00 769 70.48 0.0 hypothetical protein
blastp_pdb 3d1j_A 278 760 + 483 Gaps:53 98.95 477 34.11 1e-64 mol:protein length:477 Glycogen synthase
blastp_pdb 3guh_A 278 760 + 483 Gaps:53 97.32 485 34.11 4e-64 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4u_A 278 760 + 483 Gaps:53 97.32 485 34.11 4e-64 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4t_A 278 760 + 483 Gaps:53 97.32 485 34.11 4e-64 mol:protein length:485 Glycogen synthase
blastp_pdb 2qzs_A 278 760 + 483 Gaps:53 97.32 485 34.11 4e-64 mol:protein length:485 glycogen synthase
blastp_pdb 3cx4_A 278 760 + 483 Gaps:53 97.32 485 33.90 3e-63 mol:protein length:485 Glycogen synthase
blastp_pdb 3cop_A 278 760 + 483 Gaps:53 97.32 485 33.90 3e-63 mol:protein length:485 Glycogen synthase
blastp_pdb 1rzv_B 278 760 + 483 Gaps:44 97.11 485 34.82 2e-58 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzv_A 278 760 + 483 Gaps:44 97.11 485 34.82 2e-58 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzu_B 278 760 + 483 Gaps:44 97.11 485 34.82 2e-58 mol:protein length:485 Glycogen synthase 1
blastp_uniprot_sprot sp|Q43847|SSY2_SOLTU 16 768 + 753 Gaps:57 99.87 767 67.89 0.0 Granule-bound starch synthase 2 chloroplastic/amyloplastic OS Solanum tuberosum GN SS2 PE 1 SV 3
blastp_uniprot_sprot sp|Q9MAC8|SSY2_ARATH 79 768 + 690 Gaps:46 92.17 792 66.85 0.0 Starch synthase 2 chloroplastic/amyloplastic OS Arabidopsis thaliana GN SS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q43093|SSG2_PEA 49 768 + 720 Gaps:15 95.08 752 68.11 0.0 Granule-bound starch synthase 2 chloroplastic/amyloplastic OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|Q7XE48|SSY21_ORYSJ 147 768 + 622 Gaps:36 84.38 749 65.98 0.0 Soluble starch synthase 2-1 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN SSII-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6Z2T8|SSY22_ORYSJ 191 768 + 578 Gaps:12 83.86 694 69.76 0.0 Soluble starch synthase 2-2 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN SSII-2 PE 2 SV 2
blastp_uniprot_sprot sp|P0C586|SSY23_ORYSI 271 768 + 498 Gaps:1 61.60 810 76.55 0.0 Soluble starch synthase 2-3 chloroplastic/amyloplastic OS Oryza sativa subsp. indica GN SSII-3 PE 1 SV 1
blastp_uniprot_sprot sp|Q0DDE3|SSY23_ORYSJ 271 768 + 498 Gaps:1 61.60 810 76.15 0.0 Soluble starch synthase 2-3 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN SSII-3 PE 1 SV 1
blastp_uniprot_sprot sp|Q43654|SSY1_WHEAT 255 761 + 507 Gaps:27 80.37 647 49.62 3e-162 Starch synthase 1 chloroplastic/amyloplastic OS Triticum aestivum GN WSSI-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q0DEC8|SSY1_ORYSJ 279 761 + 483 Gaps:26 77.54 641 50.70 2e-159 Soluble starch synthase 1 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN Os06g0160700 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FNF2|SSY1_ARATH 216 768 + 553 Gaps:48 88.50 652 45.93 3e-159 Starch synthase 1 chloroplastic/amyloplastic OS Arabidopsis thaliana GN SS1 PE 2 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 278 761 484 TIGR02095 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" glgA: glycogen/starch synthase, ADP-glucose type IPR011835
SUPERFAMILY 278 760 483 SSF53756 none none none
Gene3D 534 745 212 G3DSA:3.40.50.2000 none none none
PANTHER 350 548 199 PTHR12526 none none none
PANTHER 577 764 188 PTHR12526 none none none
PANTHER 202 323 122 PTHR12526 none none none
Pfam 279 521 243 PF08323 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Starch synthase catalytic domain IPR013534
PANTHER 350 548 199 PTHR12526:SF337 none none none
PANTHER 577 764 188 PTHR12526:SF337 none none none
PANTHER 202 323 122 PTHR12526:SF337 none none none
Hamap 278 764 487 MF_00484 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Glycogen synthase [glgA]. IPR011835
Pfam 577 723 147 PF00534 none Glycosyl transferases group 1 IPR001296

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting