Protein : Qrob_P0006770.2 Q. robur
Protein Identifier  ? Qrob_P0006770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PF01535//PF13812//PF14432 - PPR repeat // Pentatricopeptide repeat domain // DYW family of nucleic acid deaminases Gene Prediction Quality  validated
Protein length 

Sequence

Length: 630  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101290886 1 629 + 629 Gaps:5 100.00 634 73.03 0.0 pentatricopeptide repeat-containing protein At5g15340 mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa020933mg 1 629 + 629 Gaps:4 100.00 633 73.30 0.0 hypothetical protein
blastp_kegg lcl|pxb:103951035 1 629 + 629 Gaps:5 100.00 632 72.47 0.0 pentatricopeptide repeat-containing protein At5g15340 mitochondrial
blastp_kegg lcl|pmum:103330045 1 629 + 629 Gaps:4 100.00 633 72.51 0.0 pentatricopeptide repeat-containing protein At5g15340 mitochondrial
blastp_kegg lcl|mdm:103404466 1 629 + 629 Gaps:5 100.00 632 72.31 0.0 pentatricopeptide repeat-containing protein At5g15340 mitochondrial-like
blastp_kegg lcl|vvi:100244019 1 629 + 629 Gaps:3 100.00 632 70.41 0.0 pentatricopeptide repeat-containing protein At5g15340 mitochondrial-like
blastp_kegg lcl|pop:POPTR_0017s12350g 3 629 + 627 Gaps:2 98.90 636 68.84 0.0 POPTRDRAFT_808949 pentatricopeptide repeat-containing family protein
blastp_kegg lcl|tcc:TCM_018654 1 629 + 629 Gaps:4 100.00 633 68.56 0.0 Pentatricopeptide repeat (PPR) superfamily protein
blastp_kegg lcl|sly:101252092 1 629 + 629 Gaps:3 100.00 632 63.29 0.0 pentatricopeptide repeat-containing protein At5g15340 mitochondrial-like
blastp_kegg lcl|cam:101496373 5 629 + 625 Gaps:4 97.80 635 66.18 0.0 pentatricopeptide repeat-containing protein At5g15340 mitochondrial-like
blastp_uniprot_sprot sp|Q9LXE8|PP386_ARATH 11 629 + 619 Gaps:14 99.04 623 59.97 0.0 Pentatricopeptide repeat-containing protein At5g15340 mitochondrial OS Arabidopsis thaliana GN PCMP-H91 PE 2 SV 1
blastp_uniprot_sprot sp|O82380|PP175_ARATH 4 629 + 626 Gaps:123 96.88 738 46.57 1e-167 Pentatricopeptide repeat-containing protein At2g29760 chloroplastic OS Arabidopsis thaliana GN PCMP-H33 PE 2 SV 1
blastp_uniprot_sprot sp|O23337|PP311_ARATH 4 629 + 626 Gaps:138 99.31 722 44.35 2e-145 Pentatricopeptide repeat-containing protein At4g14820 OS Arabidopsis thaliana GN PCMP-H3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUJ2|PP249_ARATH 5 629 + 625 Gaps:57 96.91 842 38.48 2e-142 Pentatricopeptide repeat-containing protein At3g22690 OS Arabidopsis thaliana GN PCMP-H56 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FI80|PP425_ARATH 13 629 + 617 Gaps:116 88.24 646 46.32 3e-141 Pentatricopeptide repeat-containing protein At5g48910 OS Arabidopsis thaliana GN PCMP-H38 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZT8|PP354_ARATH 7 629 + 623 Gaps:24 97.31 632 37.72 9e-141 Pentatricopeptide repeat-containing protein At4g37380 chloroplastic OS Arabidopsis thaliana GN PCMP-H48 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FJY7|PP449_ARATH 13 629 + 617 Gaps:100 97.10 620 46.18 4e-140 Pentatricopeptide repeat-containing protein At5g66520 OS Arabidopsis thaliana GN PCMP-H61 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FG16|PP367_ARATH 15 629 + 615 Gaps:27 97.43 622 37.46 1e-138 Pentatricopeptide repeat-containing protein At5g06540 OS Arabidopsis thaliana GN PCMP-H88 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LN01|PPR21_ARATH 4 629 + 626 Gaps:136 96.63 741 44.27 3e-135 Pentatricopeptide repeat-containing protein At1g08070 OS Arabidopsis thaliana GN PCMP-H12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW32|PP258_ARATH 2 629 + 628 Gaps:88 94.08 659 43.39 3e-134 Pentatricopeptide repeat-containing protein At3g26782 mitochondrial OS Arabidopsis thaliana GN PCMP-H34 PE 2 SV 1
rpsblast_cdd gnl|CDD|178630 1 629 + 629 Gaps:93 82.07 697 44.93 1e-120 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178626 4 627 + 624 Gaps:214 91.95 857 49.24 1e-120 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|206598 486 619 + 134 Gaps:30 100.00 116 38.79 1e-15 pfam14432 DYW_deaminase DYW family of nucleic acid deaminases. A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria plants Naegleria and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions which are independent lateral transfers contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
rpsblast_cdd gnl|CDD|178757 121 494 + 374 Gaps:92 32.55 1060 42.32 7e-11 PLN03218 PLN03218 maturation of RBCL 1 Provisional.

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 79 113 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 149 183 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 283 317 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 384 414 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 9 43 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 211 241 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 416 450 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 13 629 617 PTHR24015:SF266 none none none
Pfam 288 316 29 PF13812 none Pentatricopeptide repeat domain IPR002885
ProSiteProfiles 114 148 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 497 619 123 PF14432 none DYW family of nucleic acid deaminases none
TIGRFAM 288 316 29 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 152 182 31 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
ProSiteProfiles 348 383 36 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 351 376 26 PF01535 none PPR repeat IPR002885
Pfam 153 180 28 PF01535 none PPR repeat IPR002885
Pfam 388 411 24 PF01535 none PPR repeat IPR002885
Pfam 213 239 27 PF01535 none PPR repeat IPR002885
Pfam 83 111 29 PF01535 none PPR repeat IPR002885
Pfam 50 73 24 PF01535 none PPR repeat IPR002885
SUPERFAMILY 394 475 82 SSF48452 none none none
ProSiteProfiles 46 76 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Gene3D 152 176 25 G3DSA:1.25.40.10 none none IPR011990
Gene3D 414 470 57 G3DSA:1.25.40.10 none none IPR011990
Gene3D 47 93 47 G3DSA:1.25.40.10 none none IPR011990
Gene3D 275 311 37 G3DSA:1.25.40.10 none none IPR011990
PANTHER 13 629 617 PTHR24015 none none none
ProSiteProfiles 318 344 27 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Mitochondrion 1 0.035 0.956 NON-PLANT 23