Protein : Qrob_P0004570.2 Q. robur
Protein Identifier  ? Qrob_P0004570.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=27) PF12776 - Myb/SANT-like DNA-binding domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 300  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100243467 4 299 + 296 Gaps:5 98.65 297 73.38 3e-148 uncharacterized LOC100243467
blastp_kegg lcl|mus:103985286 17 299 + 283 Gaps:14 91.69 313 36.24 2e-46 uncharacterized protein LOC103985286
blastp_kegg lcl|fve:101308913 6 298 + 293 Gaps:24 98.91 274 35.42 4e-43 uncharacterized protein LOC101308913
blastp_kegg lcl|mdm:103427405 15 298 + 284 Gaps:27 97.36 303 36.61 4e-42 uncharacterized LOC103427405
blastp_kegg lcl|mdm:103432456 15 299 + 285 Gaps:25 97.69 303 35.14 1e-40 uncharacterized LOC103432456
blastp_kegg lcl|pxb:103942747 15 299 + 285 Gaps:17 97.69 303 34.80 1e-40 uncharacterized LOC103942747
blastp_kegg lcl|pmum:103322037 15 299 + 285 Gaps:11 96.39 305 31.29 4e-40 uncharacterized protein At2g29880-like
blastp_kegg lcl|cit:102608340 11 298 + 288 Gaps:20 98.63 292 31.25 7e-38 uncharacterized LOC102608340
blastp_kegg lcl|pmum:103344214 10 298 + 289 Gaps:20 98.29 292 31.71 3e-37 uncharacterized protein At2g29880-like
blastp_kegg lcl|pmum:103342585 18 298 + 281 Gaps:2 95.88 291 31.18 4e-37 uncharacterized protein At2g29880-like
blastp_uniprot_sprot sp|O82368|Y2988_ARATH 18 295 + 278 Gaps:28 92.21 308 21.48 3e-06 Uncharacterized protein At2g29880 OS Arabidopsis thaliana GN At2g29880 PE 2 SV 1
rpsblast_cdd gnl|CDD|193252 19 112 + 94 Gaps:1 98.96 96 36.84 1e-22 pfam12776 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain. This presumed domain appears to be related to other Myb/SANT like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 16 139 124 PTHR31704 none none none
PANTHER 16 139 124 PTHR31704:SF4 none none none
Pfam 19 112 94 PF12776 none Myb/SANT-like DNA-binding domain IPR024752

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting