Protein : Qrob_P0004490.2 Q. robur
Protein Identifier  ? Qrob_P0004490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 700  
Kegg Orthology  K05391
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002071mg 1 699 + 699 Gaps:26 99.72 721 67.18 0.0 hypothetical protein
blastp_kegg lcl|pmum:103332242 1 699 + 699 Gaps:25 99.86 721 67.50 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pxb:103929332 1 699 + 699 Gaps:22 100.00 719 66.06 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|mdm:103414450 1 699 + 699 Gaps:24 100.00 721 65.60 0.0 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|pper:PRUPE_ppa026143mg 1 699 + 699 Gaps:41 99.86 739 65.04 0.0 hypothetical protein
blastp_kegg lcl|pmum:103332244 1 699 + 699 Gaps:25 99.86 721 65.97 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|mdm:103439360 1 699 + 699 Gaps:29 100.00 716 64.94 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|cic:CICLE_v10019048mg 1 698 + 698 Gaps:26 100.00 722 63.99 0.0 hypothetical protein
blastp_kegg lcl|cit:102618760 1 698 + 698 Gaps:26 100.00 722 63.99 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|vvi:100267297 1 699 + 699 Gaps:30 100.00 709 65.02 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_pdb 1wgp_A 484 606 + 123 none 89.78 137 68.29 2e-51 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 3u0z_B 423 560 + 138 Gaps:7 62.38 210 28.24 4e-09 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u0z_A 423 560 + 138 Gaps:7 62.38 210 28.24 4e-09 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u11_B 423 560 + 138 Gaps:7 62.38 210 28.24 5e-09 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u11_A 423 560 + 138 Gaps:7 62.38 210 28.24 5e-09 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 2ptm_A 419 541 + 123 Gaps:1 61.62 198 24.59 5e-09 mol:protein length:198 Hyperpolarization-activated (Ih) channel
blastp_pdb 3otf_A 423 560 + 138 Gaps:7 59.55 220 28.24 6e-09 mol:protein length:220 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u10_A 423 560 + 138 Gaps:7 62.38 210 27.48 1e-08 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_B 423 560 + 138 Gaps:7 64.85 202 27.48 2e-08 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_A 423 560 + 138 Gaps:7 64.85 202 27.48 2e-08 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 1 698 + 698 Gaps:34 100.00 716 63.13 0.0 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 9 694 + 686 Gaps:51 97.75 711 61.01 0.0 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 9 695 + 687 Gaps:55 98.28 696 61.70 0.0 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 29 694 + 666 Gaps:24 97.17 706 59.48 0.0 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 45 699 + 655 Gaps:40 91.70 747 52.12 0.0 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 45 698 + 654 Gaps:47 91.27 733 53.36 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 1 697 + 697 Gaps:50 100.00 717 50.77 0.0 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 7 698 + 692 Gaps:56 97.74 753 47.01 0.0 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 82 697 + 616 Gaps:59 88.21 738 50.69 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 81 698 + 618 Gaps:60 90.63 726 50.15 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 59 289 231 PTHR10217 none none none
Pfam 510 599 90 PF00027 none Cyclic nucleotide-binding domain IPR000595
ProSiteProfiles 606 635 30 PS50096 none IQ motif profile. IPR000048
Phobius 121 131 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 86 285 200 SSF81324 none none none
SUPERFAMILY 351 411 61 SSF81324 none none none
Phobius 404 699 296 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 120 284 165 G3DSA:1.10.287.70 none none none
Gene3D 351 411 61 G3DSA:1.10.287.70 none none none
SMART 489 607 119 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
Phobius 98 120 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 422 480 59 G3DSA:1.10.287.630 none none none
Phobius 283 380 98 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 188 207 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 59 289 231 PTHR10217:SF465 none none none
PANTHER 339 643 305 PTHR10217:SF465 none none none
PANTHER 1 41 41 PTHR10217:SF465 none none none
Phobius 154 187 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 132 153 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 381 403 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 487 599 113 G3DSA:2.60.120.10 none none IPR014710
Phobius 208 262 55 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 489 573 85 PS50042 none cAMP/cGMP binding motif profile. IPR000595
PANTHER 339 643 305 PTHR10217 none none none
PANTHER 1 41 41 PTHR10217 none none none
SUPERFAMILY 419 619 201 SSF51206 none none IPR018490
Phobius 1 97 97 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 142 406 265 PF00520 none Ion transport protein IPR005821
Coils 622 643 22 Coil none none none
Phobius 263 282 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

5 Localization

Analysis Start End Length
TMHMM 259 281 22
TMHMM 98 117 19
TMHMM 381 403 22
TMHMM 132 154 22
TMHMM 188 210 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting