Protein : Qrob_P0004420.2 Q. robur
Protein Identifier  ? Qrob_P0004420.2 Organism . Name  Quercus robur
Score  79.2 Score Type  egn
Protein Description  (M=1) K14807 - ATP-dependent RNA helicase DDX51/DBP6 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 515  
Kegg Orthology  K14807
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102616133 4 514 + 511 Gaps:3 99.23 518 79.96 0.0 DEAD-box ATP-dependent RNA helicase 1-like
blastp_kegg lcl|tcc:TCM_029423 4 513 + 510 none 99.03 515 79.02 0.0 RNA helicase 1
blastp_kegg lcl|pper:PRUPE_ppa004455mg 3 505 + 503 Gaps:1 98.62 509 79.28 0.0 hypothetical protein
blastp_kegg lcl|pmum:103325155 3 505 + 503 Gaps:1 98.62 509 79.48 0.0 DEAD-box ATP-dependent RNA helicase 1
blastp_kegg lcl|pop:POPTR_0004s16530g 1 505 + 505 none 97.49 518 76.83 0.0 POPTRDRAFT_1076670 DEAD/DEAH box helicase family protein
blastp_kegg lcl|cic:CICLE_v10025380mg 4 478 + 475 none 97.74 486 81.89 0.0 hypothetical protein
blastp_kegg lcl|cmo:103484346 1 513 + 513 Gaps:7 99.42 517 77.63 0.0 DEAD-box ATP-dependent RNA helicase 1
blastp_kegg lcl|csv:101217879 1 513 + 513 Gaps:7 99.42 517 77.24 0.0 DEAD-box ATP-dependent RNA helicase 1-like
blastp_kegg lcl|vvi:100258315 2 514 + 513 none 99.42 516 77.00 0.0 DEAD-box ATP-dependent RNA helicase 1-like
blastp_kegg lcl|mdm:103435160 6 495 + 490 none 97.61 502 77.55 0.0 DEAD-box ATP-dependent RNA helicase 1
blastp_pdb 3sqx_A 34 455 + 422 Gaps:67 75.20 512 29.61 4e-30 mol:protein length:512 ATP-dependent RNA helicase MSS116 mitochondr
blastp_pdb 1hv8_B 70 447 + 378 Gaps:90 83.38 367 31.05 6e-30 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 1hv8_A 70 447 + 378 Gaps:90 83.38 367 31.05 6e-30 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 3i62_A 34 455 + 422 Gaps:67 68.38 563 29.61 6e-30 mol:protein length:563 ATP-dependent RNA helicase MSS116
blastp_pdb 3i61_A 34 455 + 422 Gaps:67 68.38 563 29.61 6e-30 mol:protein length:563 ATP-dependent RNA helicase MSS116
blastp_pdb 3i5y_A 34 455 + 422 Gaps:67 68.38 563 29.61 6e-30 mol:protein length:563 ATP-dependent RNA helicase MSS116
blastp_pdb 3i5x_A 34 455 + 422 Gaps:67 68.38 563 29.61 6e-30 mol:protein length:563 ATP-dependent RNA helicase MSS116
blastp_pdb 3sqw_A 34 455 + 422 Gaps:67 66.49 579 29.61 7e-30 mol:protein length:579 ATP-dependent RNA helicase MSS116 mitochondr
blastp_pdb 1s2m_A 57 459 + 403 Gaps:72 84.75 400 29.79 3e-29 mol:protein length:400 Putative ATP-dependent RNA helicase DHH1
blastp_pdb 2i4i_A 68 450 + 383 Gaps:88 81.77 417 31.96 2e-26 mol:protein length:417 ATP-dependent RNA helicase DDX3X
blastp_uniprot_sprot sp|Q7FGZ2|RH1_ARATH 3 513 + 511 none 97.89 522 67.51 0.0 DEAD-box ATP-dependent RNA helicase 1 OS Arabidopsis thaliana GN RH1 PE 2 SV 3
blastp_uniprot_sprot sp|Q0DWT8|RH1_ORYSJ 11 509 + 499 Gaps:1 95.59 521 61.85 0.0 DEAD-box ATP-dependent RNA helicase 1 OS Oryza sativa subsp. japonica GN Os02g0795900 PE 2 SV 1
blastp_uniprot_sprot sp|Q8N8A6|DDX51_HUMAN 5 493 + 489 Gaps:52 74.02 666 38.34 1e-93 ATP-dependent RNA helicase DDX51 OS Homo sapiens GN DDX51 PE 1 SV 3
blastp_uniprot_sprot sp|Q6DRI7|DDX51_DANRE 6 494 + 489 Gaps:65 74.85 652 39.55 6e-93 ATP-dependent RNA helicase DDX51 OS Danio rerio GN ddx51 PE 2 SV 1
blastp_uniprot_sprot sp|Q6P9R1|DDX51_MOUSE 5 493 + 489 Gaps:53 77.31 639 38.46 5e-92 ATP-dependent RNA helicase DDX51 OS Mus musculus GN Ddx51 PE 2 SV 1
blastp_uniprot_sprot sp|Q54BD6|DDX51_DICDI 41 454 + 414 Gaps:56 75.31 563 40.09 2e-73 Probable ATP-dependent RNA helicase ddx51 OS Dictyostelium discoideum GN ddx51 PE 3 SV 1
blastp_uniprot_sprot sp|P26802|DDX51_DROME 41 463 + 423 Gaps:64 63.03 687 37.41 3e-69 Probable ATP-dependent RNA helicase Dbp73D OS Drosophila melanogaster GN Dbp73D PE 2 SV 3
blastp_uniprot_sprot sp|Q76PD3|DBP6_SCHPO 1 492 + 492 Gaps:87 82.62 604 34.67 9e-69 ATP-dependent RNA helicase dbp6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN dbp6 PE 2 SV 1
blastp_uniprot_sprot sp|A5E726|DBP6_LODEL 9 449 + 441 Gaps:78 62.90 663 38.13 5e-63 ATP-dependent RNA helicase DBP6 OS Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN DBP6 PE 3 SV 1
blastp_uniprot_sprot sp|A2QA23|DBP6_ASPNC 3 495 + 493 Gaps:55 82.97 593 37.20 8e-62 ATP-dependent RNA helicase dbp6 OS Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN dbp6 PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 297 454 158 G3DSA:3.40.50.300 none none IPR027417
Gene3D 33 227 195 G3DSA:3.40.50.300 none none IPR027417
Gene3D 266 296 31 G3DSA:3.40.50.300 none none IPR027417
PANTHER 266 514 249 PTHR24031 none none none
PANTHER 3 147 145 PTHR24031 none none none
PANTHER 169 227 59 PTHR24031 none none none
SMART 46 309 264 SM00487 none DEAD-like helicases superfamily IPR014001
PANTHER 266 514 249 PTHR24031:SF68 none none none
PANTHER 3 147 145 PTHR24031:SF68 none none none
PANTHER 169 227 59 PTHR24031:SF68 none none none
SUPERFAMILY 264 451 188 SSF52540 none none IPR027417
SUPERFAMILY 101 223 123 SSF52540 none none IPR027417
ProSiteProfiles 321 471 151 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Pfam 353 429 77 PF00271 none Helicase conserved C-terminal domain IPR001650
ProSiteProfiles 62 293 232 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SMART 348 429 82 SM00490 none helicase superfamily c-terminal domain IPR001650
Pfam 65 282 218 PF00270 none DEAD/DEAH box helicase IPR011545

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting