Protein : Qrob_P0004410.2 Q. robur
Protein Identifier  ? Qrob_P0004410.2 Organism . Name  Quercus robur
Score  99.2 Score Type  egn
Protein Description  (M=3) PTHR10926 - CELL CYCLE CONTROL PROTEIN 50 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 217  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103435162 1 216 + 216 none 65.06 332 83.80 6e-134 putative ALA-interacting subunit 2
blastp_kegg lcl|pmum:103325154 1 216 + 216 none 61.02 354 83.80 8e-133 putative ALA-interacting subunit 2
blastp_kegg lcl|pop:POPTR_0011s02460g 1 216 + 216 none 73.47 294 81.94 1e-130 POPTRDRAFT_771308 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0229930 1 216 + 216 none 62.07 348 81.94 3e-130 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10015828mg 1 216 + 216 none 67.08 322 83.33 1e-129 hypothetical protein
blastp_kegg lcl|cit:102622204 1 216 + 216 none 62.97 343 82.87 2e-129 putative ALA-interacting subunit 2-like
blastp_kegg lcl|vvi:100241169 1 216 + 216 none 65.26 331 81.48 6e-128 putative ALA-interacting subunit 2-like
blastp_kegg lcl|pvu:PHAVU_009G212500g 1 216 + 216 none 62.07 348 81.02 1e-126 hypothetical protein
blastp_kegg lcl|cmo:103484348 1 213 + 213 none 55.91 381 80.28 2e-125 putative ALA-interacting subunit 2
blastp_kegg lcl|pper:PRUPE_ppa008327mg 1 197 + 197 none 58.63 336 86.80 4e-125 hypothetical protein
blastp_uniprot_sprot sp|Q67YS6|ALIS2_ARATH 1 216 + 216 none 62.97 343 74.54 3e-111 Putative ALA-interacting subunit 2 OS Arabidopsis thaliana GN ALIS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SA35|ALIS4_ARATH 1 216 + 216 none 64.29 336 63.89 6e-99 Putative ALA-interacting subunit 4 OS Arabidopsis thaliana GN ALIS4 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L8W0|ALIS5_ARATH 1 216 + 216 none 61.71 350 64.35 9e-99 ALA-interacting subunit 5 OS Arabidopsis thaliana GN ALIS5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LTW0|ALIS1_ARATH 1 216 + 216 none 61.71 350 63.89 3e-97 ALA-interacting subunit 1 OS Arabidopsis thaliana GN ALIS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SLK2|ALIS3_ARATH 1 216 + 216 none 61.89 349 62.96 6e-97 ALA-interacting subunit 3 OS Arabidopsis thaliana GN ALIS3 PE 1 SV 1
blastp_uniprot_sprot sp|Q5F362|CC50A_CHICK 5 214 + 210 Gaps:28 62.37 372 40.09 5e-45 Cell cycle control protein 50A OS Gallus gallus GN TMEM30A PE 2 SV 1
blastp_uniprot_sprot sp|Q8BHG3|CC50B_MOUSE 1 214 + 214 Gaps:35 67.71 353 38.91 6e-43 Cell cycle control protein 50B OS Mus musculus GN Tmem30b PE 2 SV 1
blastp_uniprot_sprot sp|Q8VEK0|CC50A_MOUSE 5 214 + 210 Gaps:28 64.84 364 39.41 8e-43 Cell cycle control protein 50A OS Mus musculus GN Tmem30a PE 1 SV 1
blastp_uniprot_sprot sp|Q6AY41|CC50A_RAT 5 214 + 210 Gaps:28 71.95 328 39.41 1e-42 Cell cycle control protein 50A OS Rattus norvegicus GN Tmem30a PE 2 SV 1
blastp_uniprot_sprot sp|Q3MIR4|CC50B_HUMAN 1 214 + 214 Gaps:35 68.09 351 38.91 2e-42 Cell cycle control protein 50B OS Homo sapiens GN TMEM30B PE 2 SV 1
rpsblast_cdd gnl|CDD|202611 1 216 + 216 Gaps:20 81.45 275 46.88 1e-73 pfam03381 CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family. Members of this family have been predicted to contain transmembrane helices. The family member LEM3 is a ligand-effect modulator mutation of which increases glucocorticoid receptor activity in response to dexamethasone and also confers increased activity on other intracellular receptors including the progesterone oestrogen and mineralocorticoid receptors. LEM3 is thought to affect a downstream step in the glucocorticoid receptor pathway. Factors that modulate ligand responsiveness are likely to contribute to the context-specific actions of the glucocorticoid receptor in mammalian cells. The products of genes YNR048w YNL323w and YCR094w (CDC50) show redundancy of function and are involved in regulation of transcription via CDC39. CDC39 (also known as NOT1) is normally a negative regulator of transcription either by affecting the general RNA polymerase II machinery or by altering chromatin structure. One function of CDC39 is to block activation of the mating response pathway in the absence of pheromone and mutation causes arrest in G1 by activation of the pathway. It may be that the cold-sensitive arrest in G1 noticed in CDC50 mutants may be due to inactivation of CDC39. The effects of LEM3 on glucocorticoid receptor activity may also be due to effects on transcription via CDC39.
rpsblast_cdd gnl|CDD|34640 1 212 + 212 Gaps:25 59.95 372 38.12 2e-40 COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms].
rpsblast_kog gnl|CDD|38163 1 216 + 216 Gaps:14 64.39 351 50.00 3e-73 KOG2952 KOG2952 KOG2952 Cell cycle control protein [Cell cycle control cell division chromosome partitioning Transcription Signal transduction mechanisms].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 216 216 PTHR10926 none none IPR005045
Phobius 1 189 189 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 1 215 215 PF03381 none LEM3 (ligand-effect modulator 3) family / CDC50 family IPR005045
PANTHER 1 216 216 PTHR10926:SF24 none none none
Phobius 211 216 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 190 210 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 190 212 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting