1 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005515 | protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
15 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|vvi:100251447 | 13 | 387 | + | 375 | Gaps:22 | 92.48 | 399 | 81.03 | 0.0 | F-box protein At5g46170-like |
| blastp_kegg | lcl|pvu:PHAVU_006G166500g | 6 | 387 | + | 382 | Gaps:23 | 96.83 | 379 | 82.56 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|pxb:103951299 | 2 | 387 | + | 386 | Gaps:22 | 91.28 | 436 | 76.13 | 0.0 | F-box protein At5g46170-like |
| blastp_kegg | lcl|mdm:103435009 | 2 | 387 | + | 386 | Gaps:22 | 98.76 | 403 | 75.88 | 0.0 | F-box protein At5g46170-like |
| blastp_kegg | lcl|gmx:100794477 | 6 | 387 | + | 382 | Gaps:9 | 96.90 | 387 | 79.20 | 0.0 | F-box protein At5g46170-like |
| blastp_kegg | lcl|tcc:TCM_029448 | 13 | 387 | + | 375 | Gaps:22 | 95.97 | 397 | 75.85 | 0.0 | F-box family protein |
| blastp_kegg | lcl|gmx:100802298 | 9 | 387 | + | 379 | Gaps:27 | 96.62 | 385 | 79.57 | 0.0 | F-box protein At5g46170-like |
| blastp_kegg | lcl|cit:102617241 | 5 | 387 | + | 383 | Gaps:54 | 97.12 | 417 | 75.31 | 0.0 | F-box protein At5g46170-like |
| blastp_kegg | lcl|cic:CICLE_v10015378mg | 5 | 387 | + | 383 | Gaps:53 | 97.13 | 418 | 74.63 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|cmo:103487806 | 13 | 387 | + | 375 | Gaps:26 | 91.87 | 406 | 77.75 | 0.0 | F-box protein At5g46170-like |
| blastp_uniprot_sprot | sp|Q9FNK5|FB285_ARATH | 9 | 387 | + | 379 | Gaps:18 | 95.44 | 395 | 75.60 | 0.0 | F-box protein At5g46170 OS Arabidopsis thaliana GN At5g46170 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|O49508|FB237_ARATH | 8 | 387 | + | 380 | Gaps:17 | 95.53 | 380 | 75.48 | 3e-174 | F-box protein At4g18380 OS Arabidopsis thaliana GN At4g18380 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9C534|FB19_ARATH | 8 | 387 | + | 380 | Gaps:32 | 96.04 | 379 | 72.80 | 2e-166 | F-box protein At1g30200 OS Arabidopsis thaliana GN At1g30200 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9LM18|FB303_ARATH | 13 | 387 | + | 375 | Gaps:71 | 100.00 | 314 | 42.04 | 4e-62 | F-box protein At1g22220 OS Arabidopsis thaliana GN At1g22220 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9C9S2|FB91_ARATH | 13 | 387 | + | 375 | Gaps:65 | 100.00 | 334 | 39.52 | 4e-59 | F-box protein At1g78100 OS Arabidopsis thaliana GN At1g78100 PE 1 SV 1 |
5 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 13 | 387 | 375 | PTHR31215 | none | none | none |
| ProSiteProfiles | 13 | 61 | 49 | PS50181 | none | F-box domain profile. | IPR001810 |
| Pfam | 17 | 51 | 35 | PF12937 | none | F-box-like | IPR001810 |
| SUPERFAMILY | 7 | 57 | 51 | SSF81383 | none | none | IPR001810 |
| Gene3D | 9 | 51 | 43 | G3DSA:1.20.1280.50 | none | none | none |
11 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran_2000_2002_QTL3_Delta.F | Qrob_Chr08 | 8 | s_1A3EF7_1406 | s_1AIWYC_607 | 30.17 | 21,01 | 40,21 | lod | 6.8553 | 0.055 |
| Bourran2_2014_aSeqBC_A4 | Qrob_Chr08 | 8 | v_15999_278 | v_AP13YL15_395 | 32,52 | 4,22 | 57,22 | lod | 2,7561 | 6,7 |
| Bourran2_2014_nFork*_A4 | Qrob_Chr08 | 8 | PIE175 | s_1CD7GJ_1398 | 31,22 | 5,24 | 57,24 | lod | 2,6724 | 6,8 |
| Bourran2_2014_nPriLBD_A4 | Qrob_Chr08 | 8 | PIE175 | v_9164_159 | 31,85 | 15,39 | 48,29 | lod | 2,8308 | 6,8 |
| Bourran2_2015_rEpiBC_3P | Qrob_Chr08 | 8 | s_A9TNV_543 | v_11837_70 | 9,93 | 9,83 | 11,15 | lod | 3.3 | 7.3 |
| Champenoux_2015_nSeqBC_A4 | Qrob_Chr08 | 8 | v_AD7YD13_501 | s_1A7IED_780 | 43,44 | 43,42 | 43,99 | lod | 3.7 | 8.9 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf | Qrob_Chr08 | 8 | v_5216_549 | v_11625_20 | 37.08 | 12,26 | 54,9 | lod | 6.5888 | 0.04 |
