Protein : Qrob_P0004190.2 Q. robur
Protein Identifier  ? Qrob_P0004190.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10555:SF84 - SORTING NEXIN-8 (PTHR10555:SF84) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 543  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0035091 phosphatidylinositol binding Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100251814 5 542 + 538 Gaps:39 98.39 560 72.96 0.0 sorting nexin-2-like
blastp_kegg lcl|csv:101215131 5 542 + 538 Gaps:18 98.52 542 75.09 0.0 sorting nexin 2B-like
blastp_kegg lcl|pxb:103942221 5 542 + 538 Gaps:20 98.32 537 73.11 0.0 sorting nexin 2B-like
blastp_kegg lcl|pxb:103958658 5 542 + 538 Gaps:20 98.32 537 73.11 0.0 sorting nexin 2B-like
blastp_kegg lcl|cmo:103496704 5 542 + 538 Gaps:17 85.06 629 74.95 0.0 sorting nexin 2B-like
blastp_kegg lcl|gmx:100792216 9 542 + 534 Gaps:31 97.50 520 75.94 0.0 sorting nexin 2B-like
blastp_kegg lcl|cam:101507351 14 542 + 529 Gaps:39 97.47 513 77.00 0.0 sorting nexin 2A-like
blastp_kegg lcl|pper:PRUPE_ppa003962mg 5 542 + 538 Gaps:21 98.33 538 72.21 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_008G220200g 9 542 + 534 Gaps:29 97.51 522 74.85 0.0 hypothetical protein
blastp_kegg lcl|mdm:103432873 5 542 + 538 Gaps:22 98.32 537 72.73 0.0 sorting nexin 2A-like
blastp_pdb 2i4k_A 111 232 + 122 Gaps:18 95.31 128 38.52 1e-16 mol:protein length:128 Sorting nexin-1
blastp_pdb 3iq2_B 111 235 + 125 Gaps:10 84.78 138 39.32 1e-15 mol:protein length:138 Sorting nexin-7
blastp_pdb 3iq2_A 111 235 + 125 Gaps:10 84.78 138 39.32 1e-15 mol:protein length:138 Sorting nexin-7
blastp_pdb 2csk_A 109 232 + 124 Gaps:16 82.19 146 30.00 9e-08 mol:protein length:146 Sorting nexin 12
blastp_pdb 3hpc_X 138 232 + 95 Gaps:30 75.16 161 31.40 2e-07 mol:protein length:161 Snx5 protein
blastp_pdb 3hpb_A 138 232 + 95 Gaps:30 75.16 161 31.40 2e-07 mol:protein length:161 Snx5 protein
blastp_pdb 1ocu_B 82 233 + 152 Gaps:21 94.44 162 30.07 2e-06 mol:protein length:162 SORTING NEXIN
blastp_pdb 1ocu_A 82 233 + 152 Gaps:21 94.44 162 30.07 2e-06 mol:protein length:162 SORTING NEXIN
blastp_pdb 1ocs_A 82 233 + 152 Gaps:21 94.44 162 30.07 2e-06 mol:protein length:162 SORTING NEXIN GRD19
blastp_uniprot_sprot sp|Q8L5Z7|SNX2A_ARATH 4 537 + 534 Gaps:43 97.27 587 62.70 0.0 Sorting nexin 2A OS Arabidopsis thaliana GN SNX2A PE 1 SV 1
blastp_uniprot_sprot sp|B9DFS6|SNX2B_ARATH 5 542 + 538 Gaps:35 98.78 572 60.88 0.0 Sorting nexin 2B OS Arabidopsis thaliana GN SNX2B PE 1 SV 1
blastp_uniprot_sprot sp|Q9FG38|SNX1_ARATH 101 530 + 430 Gaps:59 93.78 402 33.16 3e-33 Sorting nexin 1 OS Arabidopsis thaliana GN SNX1 PE 1 SV 1
blastp_uniprot_sprot sp|O60749|SNX2_HUMAN 111 536 + 426 Gaps:70 72.45 519 30.32 3e-28 Sorting nexin-2 OS Homo sapiens GN SNX2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9WV80|SNX1_MOUSE 111 536 + 426 Gaps:70 72.03 522 30.85 5e-28 Sorting nexin-1 OS Mus musculus GN Snx1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R503|SNX1_MACFA 111 536 + 426 Gaps:70 72.03 522 31.12 6e-28 Sorting nexin-1 OS Macaca fascicularis GN SNX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CWK8|SNX2_MOUSE 111 536 + 426 Gaps:70 72.45 519 30.05 9e-28 Sorting nexin-2 OS Mus musculus GN Snx2 PE 1 SV 2
blastp_uniprot_sprot sp|Q13596|SNX1_HUMAN 111 536 + 426 Gaps:70 72.03 522 31.12 1e-27 Sorting nexin-1 OS Homo sapiens GN SNX1 PE 1 SV 3
blastp_uniprot_sprot sp|P0C220|SNX2_MACFA 111 536 + 426 Gaps:68 72.66 523 29.47 2e-27 Sorting nexin-2 OS Macaca fascicularis GN SNX2 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R9A9|SNX2_PONAB 111 536 + 426 Gaps:68 72.66 523 29.47 2e-27 Sorting nexin-2 OS Pongo abelii GN SNX2 PE 2 SV 1
rpsblast_cdd gnl|CDD|153280 305 533 + 229 Gaps:11 100.00 218 38.99 3e-49 cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes induce membrane bending and curvature and may also be involved in protein-protein interactions.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 288 532 245 PF09325 none Vps5 C terminal like IPR015404
Coils 462 501 40 Coil none none none
Coils 427 448 22 Coil none none none
Gene3D 109 234 126 G3DSA:3.30.1520.10 none none IPR001683
SMART 116 234 119 SM00312 none PhoX homologous domain, present in p47phox and p40phox. IPR001683
ProSiteProfiles 116 238 123 PS50195 none PX domain profile. IPR001683
PANTHER 301 540 240 PTHR10555:SF84 none none none
PANTHER 45 267 223 PTHR10555:SF84 none none none
PANTHER 301 540 240 PTHR10555 none none none
PANTHER 45 267 223 PTHR10555 none none none
Pfam 110 233 124 PF00787 none PX domain IPR001683
Coils 310 338 29 Coil none none none
SUPERFAMILY 108 234 127 SSF64268 none none IPR001683

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting