Protein : Qrob_P0004140.2 Q. robur
Protein Identifier  ? Qrob_P0004140.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10799//PTHR10799:SF567 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1263  
Kegg Orthology  K10875
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042431 1 1261 + 1261 Gaps:23 99.92 1261 67.62 0.0 Chromatin remodeling complex subunit isoform 1
blastp_kegg lcl|pmum:103332836 2 1261 + 1260 Gaps:31 99.37 1277 67.38 0.0 SNF2 domain-containing protein CLASSY 1-like
blastp_kegg lcl|pper:PRUPE_ppa000332mg 2 1261 + 1260 Gaps:29 99.37 1277 66.98 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0687520 1 1262 + 1262 Gaps:32 100.00 1246 66.21 0.0 ATP-dependent helicase putative
blastp_kegg lcl|cmo:103495154 3 1261 + 1259 Gaps:17 99.13 1263 66.77 0.0 SNF2 domain-containing protein CLASSY 1-like
blastp_kegg lcl|csv:101215377 3 1261 + 1259 Gaps:30 99.12 1252 66.48 0.0 uncharacterized LOC101215377
blastp_kegg lcl|fve:101291094 3 1262 + 1260 Gaps:32 99.61 1287 67.16 0.0 uncharacterized protein LOC101291094
blastp_kegg lcl|mdm:103432866 2 1261 + 1260 Gaps:39 99.22 1285 66.12 0.0 SNF2 domain-containing protein CLASSY 1-like
blastp_kegg lcl|pxb:103958654 2 1261 + 1260 Gaps:35 99.22 1285 65.80 0.0 SNF2 domain-containing protein CLASSY 1-like
blastp_kegg lcl|gmx:100811703 2 1262 + 1261 Gaps:66 99.69 1307 62.01 0.0 SNF2 domain-containing protein CLASSY 2-like
blastp_pdb 1z3i_X 674 1219 + 546 Gaps:53 51.71 644 33.33 4e-18 mol:protein length:644 similar to RAD54-like
blastp_pdb 1z6a_A 855 1214 + 360 Gaps:74 64.80 500 27.47 5e-13 mol:protein length:500 Helicase of the snf2/rad54 family
blastp_pdb 1z63_B 855 1214 + 360 Gaps:74 64.80 500 27.47 5e-13 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z63_A 855 1214 + 360 Gaps:74 64.80 500 27.47 5e-13 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z5z_B 1080 1214 + 135 Gaps:12 49.82 271 36.30 6e-13 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 1z5z_A 1080 1214 + 135 Gaps:12 49.82 271 36.30 6e-13 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 3mwy_W 710 1218 + 509 Gaps:70 56.62 800 25.61 1e-12 mol:protein length:800 Chromo domain-containing protein 1
blastp_uniprot_sprot sp|Q9M297|CLSY1_ARATH 1 1262 + 1262 Gaps:81 99.92 1256 58.49 0.0 SNF2 domain-containing protein CLASSY 1 OS Arabidopsis thaliana GN CLSY1 PE 1 SV 1
blastp_uniprot_sprot sp|F4K493|CLSY2_ARATH 1 1262 + 1262 Gaps:93 100.00 1261 57.10 0.0 SNF2 domain-containing protein CLASSY 2 OS Arabidopsis thaliana GN CLSY2 PE 1 SV 1
blastp_uniprot_sprot sp|F4I8S3|CLSY3_ARATH 549 1246 + 698 Gaps:67 49.29 1410 34.82 9e-100 SNF2 domain-containing protein CLASSY 3 OS Arabidopsis thaliana GN CLSY3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LK10|CLSY4_ARATH 538 1260 + 723 Gaps:85 60.25 1132 35.63 1e-97 SNF2 domain-containing protein CLASSY 4 OS Arabidopsis thaliana GN CLSY4 PE 1 SV 1
blastp_uniprot_sprot sp|Q92698|RAD54_HUMAN 656 1251 + 596 Gaps:87 74.03 747 28.39 1e-36 DNA repair and recombination protein RAD54-like OS Homo sapiens GN RAD54L PE 1 SV 2
blastp_uniprot_sprot sp|P41410|RAD54_SCHPO 674 1220 + 547 Gaps:93 59.39 852 29.25 6e-36 DNA repair protein rhp54 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rhp54 PE 1 SV 2
blastp_uniprot_sprot sp|O12944|RAD54_CHICK 676 1219 + 544 Gaps:110 68.21 733 29.40 8e-35 DNA repair and recombination protein RAD54-like (Fragment) OS Gallus gallus GN RAD54L PE 2 SV 1
blastp_uniprot_sprot sp|B4M9A8|RAD54_DROVI 674 1235 + 562 Gaps:81 67.30 786 26.47 6e-33 DNA repair and recombination protein RAD54-like OS Drosophila virilis GN okr PE 3 SV 1
blastp_uniprot_sprot sp|B4KHL5|RAD54_DROMO 674 1217 + 544 Gaps:79 63.98 783 27.15 9e-33 DNA repair and recombination protein RAD54-like OS Drosophila mojavensis GN okr PE 3 SV 1
blastp_uniprot_sprot sp|B3MMA5|RAD54_DROAN 674 1217 + 544 Gaps:82 63.21 791 27.40 2e-32 DNA repair and recombination protein RAD54-like OS Drosophila ananassae GN okr PE 3 SV 1
rpsblast_cdd gnl|CDD|30899 674 1235 + 562 Gaps:71 61.09 866 22.12 3e-19 COG0553 HepA Superfamily II DNA/RNA helicases SNF2 family [Transcription / DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|201060 683 1003 + 321 Gaps:85 85.05 301 29.30 3e-15 pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g. SNF2 STH1 brahma MOT1) DNA repair (e.g. ERCC6 RAD16 RAD5) DNA recombination (e.g. RAD54) and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar ETL1).
rpsblast_cdd gnl|CDD|28960 1055 1190 + 136 Gaps:9 98.47 131 34.88 4e-13 cd00079 HELICc Helicase superfamily c-terminal domain associated with DEXDc- DEAD- and DEAH-box proteins yeast initiation factor 4A Ski2p and Hepatitis C virus NS3 helicases this domain is found in a wide variety of helicases and helicase related proteins may not be an autonomously folding unit but an integral part of the helicase 4 helicase superfamilies at present according to the organization of their signature motifs all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA unwinding the duplex in the process.

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 595 622 28 PTHR10799:SF567 none none none
PANTHER 669 774 106 PTHR10799:SF567 none none none
PANTHER 19 137 119 PTHR10799:SF567 none none none
SUPERFAMILY 852 910 59 SSF52540 none none IPR027417
SUPERFAMILY 1055 1220 166 SSF52540 none none IPR027417
ProSiteProfiles 705 907 203 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
PANTHER 595 622 28 PTHR10799 none none none
SMART 676 912 237 SM00487 none DEAD-like helicases superfamily IPR014001
Gene3D 817 900 84 G3DSA:3.40.50.300 none none IPR027417
Gene3D 675 784 110 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 1069 1229 161 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Pfam 1107 1182 76 PF00271 none Helicase conserved C-terminal domain IPR001650
PANTHER 795 914 120 PTHR10799 none none none
PANTHER 938 1257 320 PTHR10799 none none none
PANTHER 669 774 106 PTHR10799 none none none
PANTHER 19 137 119 PTHR10799 none none none
Gene3D 1053 1190 138 G3DSA:3.40.50.300 none none IPR027417
PANTHER 795 914 120 PTHR10799:SF567 none none none
PANTHER 938 1257 320 PTHR10799:SF567 none none none
Pfam 683 928 246 PF00176 none SNF2 family N-terminal domain IPR000330
SMART 1097 1182 86 SM00490 none helicase superfamily c-terminal domain IPR001650
SUPERFAMILY 659 787 129 SSF52540 none none IPR027417
SUPERFAMILY 819 909 91 SSF52540 none none IPR027417

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting