Protein : Qrob_P0003470.2 Q. robur
Protein Identifier  ? Qrob_P0003470.2 Organism . Name  Quercus robur
Protein Description  (M=21) PF13947//PF14380 - Wall-associated receptor kinase galacturonan-binding // Wall-associated receptor kinase C-terminal Alias (in v1)  Qrob_P0643500.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 294  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0030247 polysaccharide binding Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100854391 1 292 + 292 Gaps:1 96.68 301 73.88 4e-153 uncharacterized LOC100854391
blastp_kegg lcl|pmum:103342062 20 292 + 273 Gaps:1 88.89 306 77.57 4e-151 uncharacterized LOC103342062
blastp_kegg lcl|pxb:103947253 20 292 + 273 Gaps:1 86.35 315 76.10 5e-151 uncharacterized LOC103947253
blastp_kegg lcl|mdm:103414277 17 292 + 276 Gaps:1 87.30 315 75.27 9e-151 uncharacterized LOC103414277
blastp_kegg lcl|tcc:TCM_011533 1 291 + 291 Gaps:5 82.35 357 72.45 5e-148 Wall-associated receptor kinase-like 8
blastp_kegg lcl|pop:POPTR_0010s16600g 1 292 + 292 Gaps:1 96.68 301 69.42 9e-147 POPTRDRAFT_659213 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s09540g 1 291 + 291 Gaps:1 100.00 290 70.00 3e-145 POPTRDRAFT_564299 hypothetical protein
blastp_kegg lcl|cit:102610801 1 292 + 292 none 96.69 302 72.95 6e-145 uncharacterized LOC102610801
blastp_kegg lcl|pper:PRUPE_ppa009847mg 20 273 + 254 Gaps:1 92.34 274 79.45 8e-143 hypothetical protein
blastp_kegg lcl|fve:101310691 18 292 + 275 Gaps:11 89.56 297 76.69 1e-141 uncharacterized protein LOC101310691
rpsblast_cdd gnl|CDD|206118 36 134 + 99 Gaps:8 97.17 106 32.04 2e-12 pfam13947 GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding. This cysteine-rich GUB_WAK_bind domain is the extracellular part of this serine/threonine kinase that binds to the cell-wall pectins.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 35 134 100 PF13947 none Wall-associated receptor kinase galacturonan-binding IPR025287
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 222 262 41 PF14380 none Wall-associated receptor kinase C-terminal none
Phobius 9 20 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 26 293 268 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 25 24

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.982 0.016 NON-PLANT 25